# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1hxn	219	9.48e-02	1hxn	b.66.1.1	27529
1dkzA	219	8.46e-01	1dkzA	unknown_sccs	-445
				unknown_sccs	-3060
1dgwX	79	9.04e-01	1caxB	b.82.1.2	28091
1jhnA	424	1.42e+00		b.29.1.12	70060
				b.104.1.1	66722
1cb0A	283	2.31e+00	1cb0A	c.56.2.1	33790
1rz3A	201	2.55e+00		c.37.1.6	-7048
1h0bA	256	3.56e+00		b.29.1.11	83422
1s3iA	310	4.57e+00		b.46.1.1	-4111
				c.65.1.1	-8042
1dgwA	178	5.16e+00	1dgwA	b.82.1.2	28090
1r7aA	504	8.39e+00		b.71.1.1	-4664
				c.1.8.1	-5283
1sv6A	269	8.91e+00			
1jmxB	349	9.01e+00		b.69.2.2	66906
1fzvA	132	1.05e+01	1vpfA	g.17.1.1	60159
1a34A	159	1.11e+01	1a34A	b.121.7.1	23286
1sr4B	261	1.12e+01			
1vybA	238	1.13e+01			
1j1bA	420	1.26e+01		d.144.1.7	-11312
1v04A	355	1.59e+01		unknown_sccs	-4592
1xnaA	183	1.72e+01	1xnaA	b.18.1.8	23773
1d09B	153	1.79e+01	8atcB	d.58.2.1	39015
				g.41.7.1	45267
1o54A	277	1.81e+01		c.66.1.13	-8095
1kwsA	261	1.88e+01		c.68.1.7	73083
2prd	174	1.98e+01	2prd	b.40.5.1	25435
1b6rA	355	2.13e+01	1b6rA	b.84.2.1	28241
				c.30.1.1	31648
				d.142.1.2	41493
1gqpA	221	2.18e+01		b.18.1.9	70372
1cq3A	233	2.23e+01	1cq3A	b.27.1.1	23923
1o0iA	138	2.26e+01		d.38.1.5	86532
1n9pA	207	2.27e+01		b.1.18.16	80343
1pgs	314	2.44e+01	1pgs	b.121.1.1	23653
				b.121.1.1	23654
1pmi	440	2.45e+01	1pmi	b.82.1.3	28114
1hmt	132	2.45e+01	1hmt	b.60.1.2	27169
1qy5A	269	2.48e+01		d.122.1.1	-10958
1dpjA	329	2.52e+01	1smrA	b.50.1.2	26828
1f8eA	388	2.52e+01	2qwc	b.68.1.1	59694
1sfp	114	2.54e+01	1sfp	b.23.1.1	23895
1ohvA	472	2.56e+01		c.67.1.4	-8181
1ihjA	98	2.58e+01	1pdr	b.36.1.1	62382
1b1cA	181	2.63e+01	1amoA	c.23.5.2	31212
1a2vA	655	2.65e+01	1a2vA	b.30.2.1	24416
				d.17.2.1	38059
				d.17.2.1	38060
1gp1A	198	2.74e+01	1gp1A	c.47.1.10	33059
1ixmA	192	2.76e+01	1ixmA	d.123.1.1	41114
1i1jA	108	2.85e+01	1i1jA	b.34.2.1	61531
1j4aA	333	3.07e+01		c.2.1.4	71502
				c.23.12.1	71503
1nnxA	109	3.09e+01		unknown_sccs	-3899
2madH	373	3.09e+01	2bbkH	b.69.2.1	27639
1i40A	175	3.42e+01		b.40.5.1	66024
1qqp2	218	3.64e+01	1qqp2		
1h6tA	291	3.67e+01		b.1.18.15	65686
				c.10.2.1	65687
1dykA	394	3.70e+01	1dykA	b.29.1.4	24223
				b.29.1.4	24224
1gpc	218	3.91e+01	1gpc	b.40.4.7	25393
1v84A	253	3.93e+01