# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i60A 278 1.60e-06 c.1.15.4 71118 1muwA 386 1.18e-02 c.1.15.3 79495 4xis 387 3.33e-02 4xis c.1.15.3 29421 3xis 387 3.60e-02 4xis c.1.15.3 29423 2xis 387 4.11e-02 4xis c.1.15.3 29427 1xis 387 4.15e-02 4xis c.1.15.3 29422 1mnzA 388 5.21e-02 c.1.15.3 79328 1gw9A 388 6.31e-02 c.1.15.3 70658 1r4vA 171 1.99e-01 1vjzA 341 5.92e-01 1smlA 269 1.16e+00 1smlA d.157.1.1 42053 4xiaA 393 1.43e+00 4xis c.1.15.3 29439 1n6bA 473 1.48e+00 a.104.1.1 85359 1vypX 364 1.64e+00 1km4A 247 1.74e+00 c.1.2.3 72740 1gvoA 364 1.80e+00 c.1.4.1 76357 1f60A 458 1.82e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1bg4 302 2.09e+00 1taxA c.1.8.3 28806 1b31A 302 2.14e+00 1taxA c.1.8.3 28892 1k87A 669 2.21e+00 a.176.1.1 77286 c.1.23.2 77287 1h61A 364 2.33e+00 1oyc c.1.4.1 60657 1ur1A 378 2.66e+00 1ovlA 271 2.75e+00 a.123.1.1 87455 1nr6A 473 2.80e+00 1i1wA 303 2.84e+00 c.1.8.3 76732 1b5tA 275 3.28e+00 1b5tA c.1.23.1 29676 1bo1A 416 3.49e+00 1bo1A d.143.1.2 41591 1fxmA 302 3.60e+00 1taxA 1k6aA 303 3.61e+00 c.1.8.3 72081 1h5yA 253 4.00e+00 c.1.2.1 65638 1lfpA 249 4.05e+00 e.39.1.1 73885 1cz1A 394 4.20e+00 1cz1A c.1.8.3 28839 1gokA 303 4.54e+00 c.1.8.3 65420 1tux 301 4.66e+00 1taxA c.1.8.3 28907 1cec 343 4.80e+00 1ceo c.1.8.3 28809 1k7kA 221 6.23e+00 c.51.4.1 72104 1q1gA 276 6.24e+00 1rkxA 357 6.44e+00 1erzA 303 6.48e+00 1erzA d.160.1.2 59498 1eqcA 394 6.51e+00 1cz1A c.1.8.3 28811 1jk0B 345 6.83e+00 a.25.1.2 63143 1k07A 263 7.08e+00 d.157.1.1 77218 1fobA 334 7.90e+00 c.1.8.3 83255 1xyfA 436 8.02e+00 1taxA b.42.2.1 25577 c.1.8.3 28909 1aipE 405 8.04e+00 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1p3dA 475 9.51e+00 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1ceo 343 9.57e+00 1ceo c.1.8.3 28808 1k6wA 426 1.01e+01 b.92.1.2 68236 c.1.9.5 68237 1od8A 313 1.05e+01 c.1.8.3 86838 1odkA 235 1.07e+01 c.56.2.1 86863 1jtvA 327 1.18e+01 c.2.1.2 84230 1qumA 285 1.19e+01 1qumA c.1.15.1 29393 1mtzA 293 1.19e+01 c.69.1.7 79467 1eceA 358 1.19e+01 1eceA c.1.8.3 28813 1qtwA 285 1.21e+01 1qumA c.1.15.1 29392 1hzdA 272 1.28e+01 c.14.1.3 65969 1ei6A 406 1.31e+01 1c7nA 399 1.35e+01 1d2fA c.67.1.3 34413 1jd1A 129 1.36e+01 1qu9A d.79.1.1 62890 1nq6A 302 1.43e+01 1ede 310 1.43e+01 1b6g c.69.1.8 34662 1n82A 331 1.44e+01 1dqwA 267 1.48e+01 1dqwA c.1.2.3 28551 1enp 312 1.49e+01 1enp c.2.1.2 29906 1e0wA 313 1.51e+01 1taxA c.1.8.3 59150 1eno 312 1.53e+01 1enp c.2.1.2 29905 1b6g 310 1.54e+01 1b6g c.69.1.8 34661 1rr9A 200 1.59e+01 1d7oA 297 1.60e+01 1enp c.2.1.2 29907 1d2fA 390 1.69e+01 1d2fA c.67.1.3 34411 1gtkA 313 1.70e+01 c.94.1.1 76346 d.50.2.1 76347 1d4tA 104 1.74e+01 1d4tA d.93.1.1 40537 1gqoB 143 1.76e+01 c.23.13.1 76296 1o08A 221 1.80e+01 c.108.1.6 86525 1npyA 271 1.81e+01 c.2.1.7 85995 c.58.1.5 85996 1rreA 200 1.86e+01 1mumA 295 1.88e+01 c.1.12.7 85108 1ihcA 188 1.90e+01 1di6A c.57.1.1 62379 1hl8A 449 1.91e+01 1xyzA 347 1.91e+01 1taxA c.1.8.3 28804 1jljA 189 1.92e+01 c.57.1.1 63169 1fjhA 257 1.93e+01 1fjhB c.2.1.2 29870 1dvjC 246 1.97e+01 1dvjA c.1.2.3 28548 1gqoR 143 2.01e+01 c.23.13.1 76312 1kwkA 645 2.07e+01 b.71.1.1 77565 c.1.8.1 77566 c.23.16.5 77567 1rlkA 117 2.10e+01 1rxyA 253 2.15e+01 1gqoC 143 2.18e+01 c.23.13.1 76297 1ycc 108 2.23e+01 1ycc a.3.1.1 15834 1dd5A 185 2.29e+01 1dd5A d.67.3.1 39564 1ubpC 570 2.31e+01 1ubpC b.92.1.1 28432 c.1.9.2 29054 5eat 548 2.31e+01 5eat a.102.4.1 18853 a.128.1.3 19445 1uf5A 303 2.31e+01 1hl9A 449 2.39e+01 1c0dA 358 2.43e+01 1eceA c.1.8.3 28815 1dvjA 246 2.45e+01 1dvjA c.1.2.3 28546 1bu2A 229 2.46e+01 1bu2A a.74.1.1 18360 a.74.1.1 18361 1gqoJ 143 2.48e+01 c.23.13.1 76304 1gqoG 143 2.49e+01 c.23.13.1 76301 1k3fA 253 2.49e+01 c.56.2.1 68105 1gqoD 143 2.54e+01 c.23.13.1 76298 7a3hA 303 2.54e+01 7a3hA c.1.8.3 28817 2mjpA 193 2.55e+01 1b78A c.51.4.1 33223 1hizA 379 2.59e+01 c.1.8.3 65841 1gqyA 475 2.66e+01 c.5.1.1 83305 c.59.1.1 83306 c.72.2.1 83307 1lx7A 253 2.66e+01 c.56.2.1 74329 3pbgA 468 2.68e+01 1e70M c.1.8.4 28951 1gqoU 143 2.73e+01 c.23.13.1 76315 1gqoP 143 2.74e+01 c.23.13.1 76310 1h09A 338 2.75e+01 b.109.1.1 83420 c.1.8.8 83421 1fjhB 257 2.79e+01 1fjhB c.2.1.2 29871 1qnrA 344 2.80e+01 1qnoA c.1.8.3 28834 1eg7A 557 2.85e+01 1eg7A c.37.1.10 32241 1konA 249 2.86e+01 e.39.1.1 72823 1dt6A 473 2.92e+01 1dt6A a.104.1.1 18977 1uasA 362 2.95e+01 b.71.1.1 88388 c.1.8.1 88389 1rro 108 2.97e+01 1a75A a.39.1.4 17195 1gqoT 143 2.98e+01 c.23.13.1 76314 1a3h 300 2.98e+01 7a3hA c.1.8.3 28819 1gqoO 143 3.02e+01 c.23.13.1 76309 1gqoH 143 3.03e+01 c.23.13.1 76302 1gqoI 143 3.12e+01 c.23.13.1 76303 1pbgA 468 3.20e+01 1e70M c.1.8.4 28946 1gqoE 143 3.21e+01 c.23.13.1 76299 1b78A 193 3.28e+01 1b78A c.51.4.1 33221 4ubpC 570 3.28e+01 1ubpC b.92.1.1 28431 c.1.9.2 29053 1ie7C 570 3.39e+01 1ubpC b.92.1.1 62315 c.1.9.2 62316 1gudA 288 3.39e+01 c.93.1.1 83326 1hjxA 362 3.40e+01 c.1.8.5 83512 d.26.3.1 83513 1pda 315 3.42e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1lwjA 441 3.42e+01 b.71.1.1 74303 c.1.8.1 74304 1cqwA 295 3.42e+01 1b6g c.69.1.8 34679 1q6cA 495 3.43e+01 1t9kA 347 3.46e+01 1gqoF 143 3.46e+01 c.23.13.1 76300 1gqoY 143 3.47e+01 c.23.13.1 76318 1vhnA 318 3.50e+01 1qhfA 240 3.53e+01 1qhfA c.60.1.1 33960 1eg2A 319 3.55e+01 1eg2A c.66.1.11 34249 1rk6A 496 3.55e+01 1h5vA 304 3.57e+01 c.1.8.3 70898 1fds 327 3.60e+01 1fds c.2.1.2 29838 1bq3B 246 3.63e+01 1qhfA c.60.1.1 33979 1dmaA 214 3.79e+01 1aerA d.166.1.1 42251 1qnoA 344 3.88e+01 1qnoA c.1.8.3 28838 1dg3A 592 3.90e+01 1dg3A a.114.1.1 19078 c.37.1.8 32153 1gqoS 143 3.95e+01 c.23.13.1 76313