# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i60A 278 5.31e-15 c.1.15.4 71118 1k77A 260 9.59e-10 c.1.15.5 72096 1muwA 386 1.15e-08 c.1.15.3 79495 3xis 387 2.23e-08 4xis c.1.15.3 29423 4xis 387 2.31e-08 4xis c.1.15.3 29421 1qtwA 285 5.75e-06 1qumA c.1.15.1 29392 1a0cA 438 2.05e-02 1a0cA c.1.15.3 29529 1rpxA 230 7.10e-02 1rpxA c.1.2.2 28536 1m65A 245 8.50e-02 c.6.3.1 84847 1d8wA 426 8.63e-02 1de5A c.1.15.2 29394 1km4A 247 8.92e-02 c.1.2.3 72740 1h1nA 305 1.50e-01 c.1.8.3 70855 1uuqA 440 1.62e-01 1eceA 358 1.79e-01 1eceA c.1.8.3 28813 1edg 380 1.94e-01 1edg c.1.8.3 28807 1gc5A 467 2.43e-01 1gc5A c.72.1.3 60429 1rvgA 305 2.44e-01 1exbA 332 2.55e-01 1qrqA c.1.7.1 28666 1ceo 343 2.74e-01 1ceo c.1.8.3 28808 1k6wA 426 3.12e-01 b.92.1.2 68236 c.1.9.5 68237 1dvjA 246 3.26e-01 1dvjA c.1.2.3 28546 2bvwA 362 3.46e-01 1bvwA c.6.1.1 30666 1vypX 364 4.14e-01 1j5vA 351 4.37e-01 c.72.1.1 71585 1gvoA 364 4.44e-01 c.1.4.1 76357 1vjzA 341 5.74e-01 1nal1 297 5.74e-01 1nal3 1q7zA 566 6.20e-01 1bqcA 302 6.59e-01 1bqcA c.1.8.3 28831 1k1xA 659 6.98e-01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1pz1A 333 7.66e-01 1c4kA 730 7.69e-01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1oc7A 364 8.08e-01 c.6.1.1 86794 1lyxA 248 8.93e-01 c.1.1.1 78304 1a53 247 1.20e+00 1a53 c.1.2.4 28564 1b8gA 429 1.20e+00 1b8gA c.67.1.4 34499 1itcA 516 1.26e+00 b.3.1.1 83705 c.1.8.1 83706 1uhvA 500 1.28e+00 1igs 248 1.38e+00 1a53 c.1.2.4 28565 1o5kA 306 1.48e+00 1uroA 367 1.49e+00 1uroA c.1.22.1 29675 1qnrA 344 1.60e+00 1qnoA c.1.8.3 28834 1h61A 364 1.83e+00 1oyc c.1.4.1 60657 1e0wA 313 1.87e+00 1taxA c.1.8.3 59150 1f6yA 262 2.03e+00 1f6yA c.1.21.2 29673 1od8A 313 2.13e+00 c.1.8.3 86838 1oyc 400 2.15e+00 1oyc c.1.4.1 28603 1q6cA 495 2.15e+00 1r3sA 367 2.19e+00 1jg8A 347 2.22e+00 1jg8A c.67.1.1 62946 1j6oA 268 2.32e+00 c.1.9.12 77088 1m6sA 347 2.43e+00 c.67.1.1 78701 1c7nA 399 2.49e+00 1d2fA c.67.1.3 34413 1dosA 358 2.50e+00 1dosA c.1.10.2 29175 1uasA 362 2.58e+00 b.71.1.1 88388 c.1.8.1 88389 1ad1A 266 2.62e+00 1aj2 c.1.21.1 29668 1vhnA 318 2.68e+00 1m7yA 435 2.68e+00 c.67.1.4 78761 1vhcA 224 2.72e+00 1d2fA 390 2.78e+00 1d2fA c.67.1.3 34411 1o5xA 248 2.90e+00 1r89A 437 2.97e+00 1gjwA 637 3.03e+00 b.71.1.1 60582 c.1.8.1 60583 1f74A 293 3.04e+00 1nal3 c.1.10.1 29079 1ojxA 263 3.12e+00 1a04A 215 3.16e+00 1a04A a.4.6.2 16234 c.23.1.1 31089 1rk6A 496 3.31e+00 1m7jA 484 3.43e+00 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1mzhA 225 3.67e+00 c.1.10.1 79698 1ax4A 467 3.69e+00 1ax4A c.67.1.2 34391 1l2lA 457 3.97e+00 c.72.1.3 77656 1nu5A 370 4.27e+00 1rktA 205 4.30e+00 1eqcA 394 4.42e+00 1cz1A c.1.8.3 28811 1ad4A 266 4.47e+00 1aj2 c.1.21.1 29670 1gewA 356 4.53e+00 1gewA c.67.1.1 60470 1ktbA 405 4.53e+00 b.71.1.1 72960 c.1.8.1 72961 1oltA 457 4.71e+00 1geqA 248 4.72e+00 2tysA c.1.2.4 28589 1qwgA 251 4.88e+00 1kwgA 645 5.31e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1fobA 334 5.39e+00 c.1.8.3 83255 1hl2A 297 5.58e+00 c.1.10.1 83581 1bf6A 291 5.64e+00 1pscA c.1.9.3 29065 1mo0A 275 5.67e+00 c.1.1.1 79329 1ur1A 378 5.68e+00 2aaa 484 5.79e+00 7taa b.71.1.1 27777 c.1.8.1 28764 1n7kA 234 5.97e+00 c.1.10.1 85374 1l5aA 436 6.22e+00 c.43.1.2 75923 c.43.1.2 75924 1o4sA 389 6.22e+00 c.67.1.1 86620 1r6uA 437 6.36e+00 1qo2A 241 6.37e+00 1qo2A c.1.2.1 28533 1byb 495 6.51e+00 1byb c.1.8.1 28790 1iq8A 582 6.91e+00 b.122.1.1 83074 c.1.20.1 71270 d.17.6.1 83075 1e4iA 447 7.11e+00 1e70M c.1.8.4 59225 1eg2A 319 7.26e+00 1eg2A c.66.1.11 34249 1ezwA 349 7.30e+00 1ezwA c.1.16.3 29558 2ng1 293 7.30e+00 1ng1 a.24.13.1 16962 c.37.1.10 32273 1e79G 272 7.33e+00 1e79G c.49.2.1 33158 1ls1A 295 7.46e+00 a.24.13.1 78170 c.37.1.10 78171 1j9yA 385 7.54e+00 1j9yA c.1.8.3 62791 1p1mA 406 7.68e+00 b.92.1.4 87696 c.1.9.9 87697 1g0cA 364 7.76e+00 7a3hA c.1.8.3 60165 1mi3A 322 7.83e+00 1p3dA 475 8.07e+00 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1vc4A 254 8.17e+00 1nofA 383 8.22e+00 1ht6A 405 8.27e+00 b.71.1.1 83629 c.1.8.1 83630 1pyfA 312 8.68e+00 1fg7A 356 8.83e+00 1gewA c.67.1.1 59819 1cr1A 296 8.85e+00 1cr1A c.37.1.11 32286 1o60A 292 9.06e+00 1n0wA 243 9.61e+00 c.37.1.11 79772 1p0kA 349 9.75e+00 c.1.4.1 87648 1bag 425 1.03e+01 1bag b.71.1.1 27720 c.1.8.1 28707 1hkhA 279 1.05e+01 7a3hA 303 1.06e+01 7a3hA c.1.8.3 28817 1ie9A 259 1.07e+01 1db1A a.123.1.1 62318 1fxqA 267 1.11e+01 1d9eA c.1.10.4 60108 1v93A 296 1.13e+01 1aqm 453 1.13e+01 1smd b.71.1.1 27717 c.1.8.1 28704 1a8s 273 1.15e+01 1brt c.69.1.12 34710 1ho1A 242 1.15e+01 1ho1A c.1.24.1 61097 1go4A 205 1.16e+01 d.135.1.1 70292 1ujpA 271 1.20e+01 1h05A 146 1.23e+01 c.23.13.1 76433 1lqaA 346 1.26e+01 c.1.7.1 84674 1s2wA 295 1.27e+01 1k07A 263 1.27e+01 d.157.1.1 77218 1qv9A 283 1.30e+01 1n5nA 180 1.34e+01 d.167.1.1 85336 1tadA 324 1.41e+01 1cipA a.66.1.1 18194 c.37.1.8 32077 1f75A 249 1.43e+01 1f75A c.101.1.1 59662 1j6pA 418 1.44e+01 b.92.1.4 77089 c.1.9.9 77090 1m5wA 243 1.47e+01 c.1.24.1 84836 1uanA 227 1.51e+01 1mxgA 435 1.51e+01 b.71.1.1 85193 c.1.8.1 85194 1lwjA 441 1.52e+01 b.71.1.1 74303 c.1.8.1 74304 1odzA 386 1.58e+01 c.1.8.3 86889 1ih8A 271 1.59e+01 2nsyA c.26.2.1 62377 1v4eA 299 1.69e+01 1kqpA 271 1.82e+01 c.26.2.1 72883 1uwsA 489 1.86e+01 1ouvA 273 1.87e+01 1gvfA 286 1.89e+01 c.1.10.2 70599 1mi1A 414 1.91e+01 a.169.1.1 79137 b.55.1.6 79138 1aerA 205 1.94e+01 1aerA d.166.1.1 42249 1eokA 290 1.95e+01 1eokA c.1.8.5 28991 1pzxA 289 1.98e+01 1eyeA 280 1.99e+01 1aj2 c.1.21.1 29672 1kkhA 317 2.00e+01 d.14.1.5 72645 d.58.26.3 72646 1b5tA 275 2.00e+01 1b5tA c.1.23.1 29676 1g94A 448 2.06e+01 b.71.1.1 65169 c.1.8.1 65170 1aj2 282 2.08e+01 1aj2 c.1.21.1 29665 1k2yX 463 2.12e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1tml 286 2.15e+01 1tml c.6.1.1 30656 1kutA 230 2.16e+01 d.143.1.1 73017 1uqtA 482 2.16e+01 1dfoA 417 2.20e+01 1bj4A c.67.1.4 34480 1k87A 669 2.26e+01 a.176.1.1 77286 c.1.23.2 77287 1sviA 195 2.31e+01 1j9aA 184 2.31e+01 c.55.3.5 84135 1mumA 295 2.35e+01 c.1.12.7 85108 1brt 277 2.37e+01 1brt c.69.1.12 34699 1tag 324 2.37e+01 1cipA a.66.1.1 18197 c.37.1.8 32080 1v1aA 309 2.41e+01 1ag9A 175 2.42e+01 1rcf c.23.5.1 31178 1jae 471 2.49e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1jdc 429 2.53e+01 1jdc b.71.1.1 27789 c.1.8.1 28776 1db1A 259 2.53e+01 1db1A a.123.1.1 19329 1f4pA 147 2.60e+01 5nul c.23.5.1 59651 1bo1A 416 2.61e+01 1bo1A d.143.1.2 41591 1jilA 420 2.62e+01 c.26.1.1 66745 1b1cA 181 2.67e+01 1amoA c.23.5.2 31212 1qvzA 237 2.69e+01 1fs7A 485 2.69e+01 1qdbA a.138.1.3 19691 1n55A 251 2.72e+01 c.1.1.1 80007 1h09A 338 2.72e+01 b.109.1.1 83420 c.1.8.8 83421 1ua4A 455 2.75e+01 1vjnA 220 2.77e+01 1he1A 135 2.83e+01 1he1A a.24.11.1 16641 1r1dA 247 2.83e+01 1fwsA 267 2.85e+01 1d9eA c.1.10.4 60063 1n7oA 721 2.87e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1eguA 731 2.96e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1v5wA 343 3.02e+01 1gcyA 527 3.04e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1m7xA 617 3.11e+01 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1nlnA 204 3.12e+01 1o0yA 260 3.13e+01 c.1.10.1 80756 1onwA 390 3.14e+01 b.92.1.7 87172 c.1.9.13 87173 1vsrA 136 3.19e+01 1vsrA c.52.1.15 33332 2if1 126 3.21e+01 2if1 d.64.1.1 39547 1ub3A 220 3.21e+01 c.1.10.1 88395 1ej0A 180 3.32e+01 1ej0A c.66.1.2 34179 1jcxA 267 3.35e+01 c.1.10.4 66510 1cipA 353 3.39e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1dv1A 449 3.42e+01 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1jeyB 565 3.44e+01 1jeqB e.31.1.2 62925 1zfjA 491 3.48e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1q45A 391 3.55e+01 1v8gA 329 3.60e+01 1iv8A 720 3.61e+01 b.71.1.1 76842 c.1.8.1 76843 1ituA 369 3.62e+01 c.1.9.7 71423 1ff9A 450 3.62e+01 1ff9A c.2.1.3 30039 d.81.1.2 39954 1v02A 565 3.64e+01 1qj5A 429 3.67e+01 1dtyA c.67.1.4 34493 1lc5A 364 3.68e+01 c.67.1.1 73827 2tysA 268 3.69e+01 2tysA c.1.2.4 28572 1onxA 390 3.75e+01 b.92.1.7 87176 c.1.9.13 87177 1jli 112 3.78e+01 1jli a.26.1.2 16884 1lfpA 249 3.78e+01 e.39.1.1 73885 1io2A 213 3.82e+01 1ekeA c.55.3.1 62612 1f60A 458 3.83e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1lxa 262 3.84e+01 1lxa b.81.1.1 28052 2cmd 312 3.84e+01 2cmd c.2.1.5 30135 d.162.1.1 42102 1n82A 331 3.86e+01 1gtmA 419 3.88e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1ni4A 365 3.89e+01 c.36.1.7 85728 1nthA 458 3.92e+01 c.1.25.1 80730 1h6zA 913 3.93e+01 c.1.12.2 70906 c.8.1.1 70907 d.142.1.5 70908 1kgsA 225 3.94e+01 a.4.6.1 68596 c.23.1.1 68597 1vj7A 393 3.95e+01 1mroC 247 3.97e+01 1mroC d.58.31.1 39437 1ps1A 337 4.00e+01 1ps1A a.128.1.4 19450