PFRMAT RR
TARGET T0208
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximate of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artifical neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
MKWGFRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQAL
KQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGIS
LVCYSFKPIFGWAKTDLAYENEDGSLSLLFDQAVVENMQPEDMYQLIHSQ
SKGFRLPGWEEERLQQFQELKAMYAGVTEEDLVENLRYFLERVIPVCEEE
NIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPANGITFCTGSLG
ADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAE
LMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYEAT
KAKQNRK
102 243 0 8 0.412
243 318 0 8 0.409
207 247 0 8 0.407
243 320 0 8 0.398
245 317 0 8 0.395
87 248 0 8 0.395
190 247 0 8 0.386
270 315 0 8 0.384
93 245 0 8 0.381
243 264 0 8 0.375
247 315 0 8 0.37
207 318 0 8 0.37
245 315 0 8 0.367
189 318 0 8 0.367
274 319 0 8 0.364
243 319 0 8 0.364
220 315 0 8 0.358
277 289 0 8 0.356
90 221 0 8 0.356
207 240 0 8 0.353
298 317 0 8 0.35
243 258 0 8 0.35
189 245 0 8 0.347
103 243 0 8 0.337
223 248 0 8 0.326
206 248 0 8 0.323
274 289 0 8 0.321
209 246 0 8 0.321
208 243 0 8 0.321
193 257 0 8 0.321
189 317 0 8 0.321
249 274 0 8 0.31
220 318 0 8 0.31
209 243 0 8 0.31
207 246 0 8 0.31
207 220 0 8 0.308
243 310 0 8 0.303
232 318 0 8 0.303
143 228 0 8 0.303
245 316 0 8 0.3
189 243 0 8 0.3
91 232 0 8 0.3
245 274 0 8 0.298
243 288 0 8 0.298
228 247 0 8 0.298
274 317 0 8 0.295
207 317 0 8 0.295
277 288 0 8 0.29
274 318 0 8 0.29
274 288 0 8 0.29
240 317 0 8 0.29
220 247 0 8 0.29
153 245 0 8 0.29
103 270 0 8 0.29
103 258 0 8 0.29
207 245 0 8 0.288
147 206 0 8 0.285
247 284 0 8 0.283
242 316 0 8 0.283
99 208 0 8 0.283
248 264 0 8 0.28
207 315 0 8 0.278
207 253 0 8 0.278
189 220 0 8 0.278
255 318 0 8 0.276
207 228 0 8 0.276
220 274 0 8 0.273
154 228 0 8 0.273
207 276 0 8 0.271
170 220 0 8 0.271
112 248 0 8 0.271
66 248 0 8 0.271
206 315 0 8 0.268
190 227 0 8 0.268
189 255 0 8 0.268
146 193 0 8 0.268
252 320 0 8 0.266
252 317 0 8 0.266
243 277 0 8 0.266
209 274 0 8 0.266
277 318 0 8 0.264
243 316 0 8 0.264
242 270 0 8 0.264
222 243 0 8 0.264
206 318 0 8 0.264
188 317 0 8 0.264
23 342 0 8 0.264
245 308 0 8 0.261
241 262 0 8 0.261
170 190 0 8 0.261
209 220 0 8 0.259
112 243 0 8 0.259
245 318 0 8 0.257
245 257 0 8 0.257
243 298 0 8 0.257
254 318 0 8 0.255
209 254 0 8 0.255
209 245 0 8 0.255
207 250 0 8 0.255
194 268 0 8 0.255
216 243 0 8 0.25
191 272 0 8 0.25
243 315 0 8 0.248
248 320 0 8 0.246
189 240 0 8 0.246
235 246 0 8 0.243
232 251 0 8 0.243
209 264 0 8 0.243
186 243 0 8 0.243
174 255 0 8 0.243
102 128 0 8 0.243
298 316 0 8 0.241
256 319 0 8 0.241
248 315 0 8 0.241
243 317 0 8 0.241
243 293 0 8 0.241
209 277 0 8 0.241
66 108 0 8 0.241
298 318 0 8 0.239
298 315 0 8 0.239
232 290 0 8 0.239
190 298 0 8 0.239
104 207 0 8 0.239
86 248 0 8 0.239
248 316 0 8 0.237
208 318 0 8 0.237
208 248 0 8 0.237
96 105 0 8 0.237
270 298 0 8 0.235
270 289 0 8 0.235
251 296 0 8 0.235
249 315 0 8 0.235
248 318 0 8 0.235
245 298 0 8 0.235
243 313 0 8 0.235
209 319 0 8 0.235
208 245 0 8 0.235
26 129 0 8 0.235
270 318 0 8 0.232
246 273 0 8 0.232
228 267 0 8 0.232
206 319 0 8 0.232
204 222 0 8 0.232
193 248 0 8 0.232
189 264 0 8 0.232
99 243 0 8 0.232
91 234 0 8 0.232
87 243 0 8 0.232
232 319 0 8 0.23
183 277 0 8 0.23
132 161 0 8 0.23
120 150 0 8 0.23
102 248 0 8 0.23
101 254 0 8 0.23
312 342 0 8 0.228
277 319 0 8 0.228
249 296 0 8 0.228
208 316 0 8 0.228
208 242 0 8 0.228
193 243 0 8 0.228
193 240 0 8 0.228
108 248 0 8 0.228
90 248 0 8 0.228
87 245 0 8 0.228
273 313 0 8 0.226
249 318 0 8 0.226
227 285 0 8 0.226
209 318 0 8 0.226
208 249 0 8 0.226
207 260 0 8 0.226
103 207 0 8 0.226
102 315 0 8 0.226
101 248 0 8 0.226
248 317 0 8 0.224
247 276 0 8 0.224
240 318 0 8 0.224
190 249 0 8 0.224
175 209 0 8 0.224
END