# List of top-scoring protein chains for T0206.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k2eA 156 1.50e-01 d.113.1.1 72010 1h6xA 170 3.61e-01 b.18.1.7 70903 1h6yA 170 3.85e-01 b.18.1.7 70904 2vsgA 358 5.19e-01 2vsgA h.4.1.1 45780 6rxn 46 9.96e-01 1rb9 g.41.5.1 45222 1ns8A 347 1.25e+00 b.30.5.4 80709 1igoA 205 1.30e+00 b.29.1.11 71209 1ns4A 347 1.45e+00 b.30.5.4 80703 1meoA 209 2.27e+00 c.65.1.1 79035 1vjeA 166 2.37e+00 1pe0A 197 3.01e+00 c.23.16.2 88045 1pdvA 197 3.04e+00 c.23.16.2 88036 1mmuA 347 3.10e+00 b.30.5.4 79303 1nsuA 347 3.13e+00 b.30.5.4 80718 1kw4A 89 3.61e+00 a.60.1.2 73077 1cs0B 382 3.93e+00 1c3oB c.8.3.1 30740 c.23.16.1 31417 1a9xB 379 4.37e+00 1c3oB c.8.3.1 30732 c.23.16.1 31409 1jdbC 382 4.38e+00 c.8.3.1 30756 c.23.16.1 31433 1m6vB 382 4.41e+00 c.8.3.1 74542 c.23.16.1 74543 1nszA 347 4.57e+00 b.30.5.4 80724 1sr3A 136 4.84e+00 1ln4A 104 4.90e+00 d.68.4.1 74043 1ns7A 347 4.99e+00 b.30.5.4 80707 1c30B 382 5.68e+00 c.8.3.1 30736 c.23.16.1 31413 1bnb 38 5.76e+00 1bnb g.9.1.1 44592 1oy1A 228 6.09e+00 c.23.16.6 87548 1m9sA 605 6.11e+00 b.1.18.15 78874 b.34.11.1 78875 b.34.11.1 78876 b.34.11.1 78877 c.10.2.1 78878 1nxiA 132 6.18e+00 d.58.47.1 86381 1qexA 288 6.38e+00 1qexA b.32.1.1 24425 1lw6E 281 6.58e+00 c.41.1.1 74293 1j6wA 175 7.51e+00 1j98A d.185.1.2 62663 1nssA 347 7.64e+00 b.30.5.4 80716 1ur1A 378 7.82e+00 1bt3A 345 8.60e+00 1bt3A a.86.1.2 18507 1hdmA 201 8.63e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1m14A 333 8.73e+00 d.144.1.7 78367 1ktbA 405 9.74e+00 b.71.1.1 72960 c.1.8.1 72961 1rynA 202 1.07e+01 1keeB 381 1.13e+01 c.8.3.1 68498 c.23.16.1 68499 1p4eA 429 1.18e+01 a.60.9.1 87764 d.163.1.1 87765 1gmlA 178 1.20e+01 c.8.5.2 70273 1p4eC 428 1.21e+01 a.60.9.1 87768 d.163.1.1 87769 1p5tA 127 1.21e+01 1uiyA 253 1.34e+01 1puoA 170 1.35e+01 1si8A 484 1.35e+01 1g6oA 330 1.36e+01 1g6oA c.37.1.11 32430 1jymA 183 1.38e+01 d.167.1.1 71957 1k6dA 220 1.44e+01 c.63.1.2 72082 1lktA 104 1.50e+01 1lktA b.90.1.1 28398 1i8aA 189 1.50e+01 1i82A b.1.9.2 61951 1pg5B 168 1.51e+01 1p4iH 124 1.51e+01 1p4bH 124 1.51e+01 1fmb 104 1.52e+01 1fmb b.50.1.1 26777 1vgzA 241 1.53e+01 1knxA 312 1.55e+01 c.98.2.1 77459 c.91.1.2 77460 1fl0A 171 1.55e+01 1eujA b.40.4.4 25315 1ds1A 324 1.58e+01 1drtA b.82.2.2 28127 1vh5A 148 1.62e+01 1o4zA 346 1.71e+01 1p5jA 372 1.86e+01 1hkvA 453 1.86e+01 b.49.2.3 83559 c.1.6.1 83560 1pls 113 1.95e+01 1pls b.55.1.1 26965 1h41A 708 1.95e+01 c.1.8.10 83472 d.92.2.2 83473 1rqcA 185 1.96e+01 1nkvA 256 1.98e+01 c.66.1.21 80577 1e7zA 174 1.99e+01 1eujA b.40.4.4 25318 1gqiA 708 2.03e+01 c.1.8.10 76279 d.92.2.2 76280 1bc9 200 2.03e+01 1pbv a.118.3.1 19180 1tdj 514 2.07e+01 1tdj c.79.1.1 35297 d.58.18.2 39356 d.58.18.2 39357 1har 216 2.12e+01 1rthA e.8.1.2 43025 1vhcA 224 2.17e+01 1vizA 240 2.24e+01 1h65A 270 2.32e+01 c.37.1.8 65640 1d4bA 122 2.41e+01 1d4bA d.15.2.1 37638 1fsz 372 2.48e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1ri6A 343 2.49e+01 1pnuJ 141 2.49e+01 i.1.1.1 88207 1qmbB 42 2.56e+01 7apiB 1oryA 130 2.62e+01 1mejA 223 2.63e+01 c.65.1.1 79029 1orjA 130 2.64e+01 1kkdA 102 2.64e+01 f.15.1.1 68668 1pc2A 152 2.72e+01 1l0sA 90 2.75e+01 b.81.2.1 73408 4nosA 427 2.77e+01 1nseA d.174.1.1 42516 1nkwJ 156 2.77e+01 i.1.1.2 80595 1nsiA 431 2.81e+01 1nseA d.174.1.1 42522 1oqeA 144 2.91e+01 b.22.1.1 87286 1kjvA 284 2.92e+01 b.1.1.2 77421 d.19.1.1 77422 1otz 148 2.95e+01 1uddA 226 2.97e+01 2por 301 2.97e+01 2por f.4.3.1 43759 1kxgA 152 2.98e+01 b.22.1.1 73145 1ep1B 261 3.09e+01 1ep2B b.43.4.2 25665 c.25.1.3 31555 1kd7A 164 3.09e+01 b.22.1.1 77331 1ep3B 262 3.09e+01 1ep2B b.43.4.2 25664 c.25.1.3 31554 1jh3A 107 3.10e+01 d.66.1.4 71661 1osgA 208 3.27e+01 b.22.1.1 87381 1r88A 280 3.29e+01 1rkqA 282 3.36e+01 1ewwA 90 3.37e+01 1ewwA b.81.2.1 28075 1it9L 214 3.42e+01 b.1.1.1 76785 b.1.1.2 76786 1ro2A 216 3.44e+01 1sqhA 312 3.46e+01 1orrA 347 3.51e+01 1vhqA 232 3.56e+01 1gkzA 388 3.57e+01 a.29.5.1 65268 d.122.1.4 65269 1m8nA 121 3.57e+01 b.81.2.1 78771 1be7 54 3.58e+01 1rb9 g.41.5.1 45232 1fzyA 149 3.59e+01 d.20.1.1 65072 1k6zA 141 3.59e+01 d.198.1.1 68247 1rniA 216 3.60e+01 1eztA 166 3.61e+01 1agrE a.91.1.1 18541 1h0bA 256 3.71e+01 b.29.1.11 83422 1d7oA 297 3.71e+01 1enp c.2.1.2 29907 1iqdA 211 3.72e+01 32c2A b.1.1.1 62644 b.1.1.2 62645 1yub 245 3.82e+01 2ercA c.66.1.24 34219 1js1X 324 3.92e+01 c.78.1.1 71834 c.78.1.1 71835 1bxnI 139 3.98e+01 1rboC d.73.1.1 39666