# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jh5A 144 5.75e-01 b.22.1.1 66697 1kxgA 152 7.30e-01 b.22.1.1 73145 1hdmA 201 5.89e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1eal 127 6.29e+00 1hmt b.60.1.2 27227 1kmtA 141 8.81e+00 b.1.18.8 77442 6rxn 46 8.87e+00 1rb9 g.41.5.1 45222 1ajw 145 9.38e+00 1rhoA b.1.18.8 21905 1p32A 209 1.09e+01 1p32A d.25.1.1 38379 1a3yA 149 1.14e+01 1obpA b.60.1.1 27110 1i82A 189 1.16e+01 1i82A b.1.9.2 61937 1i8aA 189 1.16e+01 1i82A b.1.9.2 61951 1b0uA 262 1.18e+01 1b0uA c.37.1.12 32370 1l0sA 90 1.24e+01 b.81.2.1 73408 1my6A 199 1.36e+01 a.2.11.1 85232 d.44.1.1 85233 1udsA 255 1.42e+01 1lurA 339 1.43e+01 b.30.5.4 84717 1o22A 170 1.49e+01 d.238.1.1 86557 1ex0A 731 1.84e+01 1rhoA 145 1.86e+01 1rhoA b.1.18.8 21899 1jj2P 95 1.87e+01 1ffkN b.34.5.1 63101 1qrkA 731 2.11e+01 1f13A b.1.18.9 21889 b.1.5.1 22187 b.1.5.1 22188 d.3.1.4 37119 1rhoC 145 2.12e+01 1rhoA b.1.18.8 21901 2vsgA 358 2.16e+01 2vsgA h.4.1.1 45780 2bgu 351 2.17e+01 1c3jA c.87.1.1 35460 1ggtB 731 2.24e+01 1f13A b.1.18.9 21882 b.1.5.1 22173 b.1.5.1 22174 d.3.1.4 37112 1shdA 107 2.29e+01 1fmk d.93.1.1 40440 1fsoA 139 2.39e+01 1rhoA b.1.18.8 60007 1bkb 136 2.42e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1nh1A 330 2.42e+01 1b4rA 80 2.44e+01 1b4rA b.1.3.1 22072 1dfx 125 2.45e+01 1dfx b.1.13.1 22367 g.41.5.2 45255 1l8fA 207 2.48e+01 b.52.1.1 84537 1f13A 731 2.67e+01 1f13A b.1.18.9 21877 b.1.5.1 22163 b.1.5.1 22164 d.3.1.4 37107 1b6fA 159 2.70e+01 1bv1 d.129.3.1 41316 1evuA 731 2.71e+01 1f13A b.1.18.9 21883 b.1.5.1 22175 b.1.5.1 22176 d.3.1.4 37113 1n57A 291 2.75e+01 c.23.16.7 85328 1q3oA 109 2.75e+01 1uynX 308 2.93e+01 1o59A 355 2.97e+01 1ep0A 185 3.00e+01 1dzrA b.82.1.1 28080 1ffkN 95 3.09e+01 1ffkN b.34.5.1 24606 1nepA 130 3.24e+01 b.1.18.7 80440 1d8hA 311 3.39e+01 1d8iA d.63.1.1 39544 1dzkA 157 3.52e+01 1obpA b.60.1.1 27096 1obpA 159 3.58e+01 1obpA b.60.1.1 27092 1ois 223 3.65e+01 1a36A e.15.1.1 43267 1szqA 483 3.66e+01 1k6dA 220 3.72e+01 c.63.1.2 72082 1gguA 731 3.75e+01 1f13A b.1.18.9 21885 b.1.5.1 22179 b.1.5.1 22180 d.3.1.4 37115 1b5eA 246 3.79e+01 1b5eA d.117.1.1 41056 1el6A 219 3.83e+01 1el6B d.182.1.1 42606 1sgc 181 3.87e+01 1qq4A b.47.1.1 25810 2sga 181 3.87e+01 1qq4A b.47.1.1 25808 1m8nA 121 3.88e+01 b.81.2.1 78771 1omzA 293 3.93e+01 c.68.1.15 87093 1gl0I 35 3.97e+01 g.4.1.1 65271