# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fsoA 139 5.91e-01 1rhoA b.1.18.8 60007 1aozA 552 7.50e-01 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1kmtA 141 7.51e-01 b.1.18.8 77442 1kxgA 152 1.06e+00 b.22.1.1 73145 1nepA 130 1.51e+00 b.1.18.7 80440 1nkgA 508 2.77e+00 1kjvB 100 2.86e+00 b.1.1.2 77423 1g1cA 99 3.28e+00 b.1.1.4 65078 1ieaA 192 3.55e+00 1iakA b.1.1.2 21631 d.19.1.1 38205 1cx4A 305 5.01e+00 b.82.3.2 59099 b.82.3.2 59100 1i88A 389 5.65e+00 c.95.1.2 66070 c.95.1.2 66071 1i5pA 633 5.83e+00 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1cwvA 492 6.16e+00 1cwvA b.1.14.1 22373 b.1.14.1 22374 b.1.14.1 22375 b.1.14.1 22376 d.169.1.3 42442 8fabA 212 7.27e+00 8fabA b.1.1.1 19772 b.1.1.2 20882 1hdmA 201 7.52e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 6rxn 46 7.79e+00 1rb9 g.41.5.1 45222 1tzaA 134 8.01e+00 1rwiA 270 9.62e+00 unknown_sccs -4603 1svpA 161 1.06e+01 1svpA b.47.1.3 26384 1ggxA 223 1.06e+01 1ggxA d.22.1.1 38367 1gxuA 91 1.09e+01 d.58.10.1 76378 1o59A 355 1.15e+01 unknown_sccs -3132 unknown_sccs -3133 1cs6A 382 1.18e+01 1cs6A b.1.1.4 21760 b.1.1.4 21761 b.1.1.4 21762 b.1.1.4 21763 1n08A 163 1.23e+01 b.43.5.1 79730 1j9qA 341 1.33e+01 1nif b.6.1.3 62765 b.6.1.3 62766 1a49A 530 1.35e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1e2wA 251 1.42e+01 1hcz b.2.6.1 22466 b.84.2.2 28252 1snrA 341 1.47e+01 1o75A 415 1.52e+01 b.1.20.1 81117 b.1.20.1 81118 b.120.1.1 81119 1fzoB 99 1.63e+01 1agdB b.1.1.2 60157 1lurA 339 1.69e+01 b.30.5.4 84717 4pep 326 1.73e+01 1smrA b.50.1.2 26843 1nciA 110 1.77e+01 1edhA b.1.6.1 22191 1lvoA 302 1.93e+01 b.47.1.4 74284 1lk2B 99 1.94e+01 b.1.1.2 -2576 1f0lA 535 1.95e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1ako 268 2.02e+01 1ako d.151.1.1 41779 1qfhA 212 2.02e+01 1qfhA b.1.18.10 21893 b.1.18.10 21894 1rj8A 164 2.05e+01 b.22.1.1 -3263 1ewfA 456 2.20e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1fzkB 99 2.22e+01 1agdB b.1.1.2 60151 2apr 325 2.25e+01 2er7E b.50.1.2 26819 1n7eA 97 2.33e+01 b.36.1.1 -3745 1k5nB 100 2.35e+01 b.1.1.2 77268 1d4xG 126 2.38e+01 1d0nA d.109.1.1 59109 1h9oA 112 2.40e+01 1qadA d.93.1.1 60837 1i8aA 189 2.43e+01 1i82A b.1.9.2 61951 1bv1 159 2.44e+01 1bv1 d.129.3.1 41313 1ox0A 430 2.45e+01 c.95.1.1 87495 c.95.1.1 87496 1jb7A 495 2.61e+01 1otcA b.40.4.3 62836 b.40.4.3 62837 b.40.4.3 62838 1cqkA 101 2.61e+01 1cqkA b.1.1.2 21547 1i4fB 100 2.65e+01 1agdB b.1.1.2 61689 1qr0A 228 2.66e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1iro 54 2.77e+01 1rb9 g.41.5.1 45223 3aprE 325 2.86e+01 2er7E b.50.1.2 26820 1nm1G 125 3.06e+01 d.109.1.1 80653 3psg 370 3.27e+01 1smrA b.50.1.2 26841 1pamA 686 3.27e+01 1cxlA b.1.18.2 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1ncwL 219 3.35e+01 b.1.1.1 85557 b.1.1.2 85558 1d7yA 408 3.35e+01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1f97A 212 3.39e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 1rlw 126 3.49e+01 1rlw b.7.1.1 23177 1pvxA 194 3.51e+01 1axkA b.29.1.11 24341 1k12A 158 3.59e+01 b.18.1.15 71978 1g6gA 127 3.61e+01 1g6gA b.26.1.2 23916 1ms9A 648 3.68e+01 b.29.1.15 85088 b.68.1.1 85089 1l6oA 95 3.79e+01 b.36.1.1 84534 1szwA 379 3.80e+01 unknown_sccs -10164 1rcqA 357 3.81e+01 1qz8A 113 3.84e+01 unknown_sccs -4264 1obpA 159 3.85e+01 1obpA b.60.1.1 27092 1n4wA 504 3.91e+01 c.3.1.2 -5991 d.16.1.1 -9209