# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
6rxn	46	1.53e+00	1rb9	g.41.5.1	45222
1kxgA	152	1.91e+00		b.22.1.1	73145
1bkb	136	4.03e+00	1bkb	b.34.5.2	24609
				b.40.4.5	25341
1l0sA	90	4.35e+00		b.81.2.1	73408
1l8fA	207	8.54e+00		b.52.1.1	84537
1nfp	228	1.01e+01	1nfp	c.1.16.2	29555
1my6A	199	1.44e+01		a.2.11.1	85232
				d.44.1.1	85233
1p5vA	235	1.45e+01		b.1.11.1	87812
				b.7.2.1	87813
1dzkA	157	1.50e+01	1obpA	b.60.1.1	27096
1jj2P	95	1.51e+01	1ffkN	b.34.5.1	63101
1e0tA	470	1.82e+01	1a49A	b.58.1.1	27064
				c.1.12.1	29292
				c.49.1.1	33146
1hdmA	201	1.86e+01	1iakA	b.1.1.2	21583
				d.19.1.1	38157
1i8aA	189	1.95e+01	1i82A	b.1.9.2	61951
1o22A	170	1.99e+01		d.238.1.1	86557
1ois	223	2.16e+01	1a36A	e.15.1.1	43267
1k2eA	156	2.16e+01		d.113.1.1	72010
1erjA	393	2.17e+01	1erjA	b.69.4.1	27660
1fsoA	139	2.31e+01	1rhoA	b.1.18.8	60007
4ubpC	570	2.41e+01	1ubpC	b.92.1.1	28431
				c.1.9.2	29053
1nkgA	508	2.41e+01			
1jakA	512	2.64e+01		c.1.8.6	66472
				d.92.2.1	66473
1hp5A	512	2.65e+01	1hp4A	c.1.8.6	61113
				d.92.2.1	61114
1kmtA	141	2.69e+01		b.1.18.8	77442
1nh1A	330	3.43e+01			
1cwvA	492	3.45e+01	1cwvA	b.1.14.1	22373
				b.1.14.1	22374
				b.1.14.1	22375
				b.1.14.1	22376
				d.169.1.3	42442
1rb9	53	3.69e+01	1rb9	g.41.5.1	45214
1shdA	107	3.71e+01	1fmk	d.93.1.1	40440
1gr3A	160	3.80e+01		b.22.1.1	65476
1uf6A	178	3.89e+01