# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 6rxn 46 2.12e-01 1rb9 g.41.5.1 45222 1kmtA 141 4.06e-01 b.1.18.8 77442 1fsoA 139 5.14e-01 1rhoA b.1.18.8 60007 1kxgA 152 5.28e-01 b.22.1.1 73145 1hdmA 201 1.90e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1nkgA 508 2.33e+00 1iro 54 2.57e+00 1rb9 g.41.5.1 45223 8fabA 212 4.39e+00 8fabA b.1.1.1 19772 b.1.1.2 20882 1kjvB 100 4.54e+00 b.1.1.2 77423 1g1cA 99 4.78e+00 b.1.1.4 65078 1dzkA 157 5.57e+00 1obpA b.60.1.1 27096 1nepA 130 6.51e+00 b.1.18.7 80440 1ikpA 613 6.96e+00 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1cs6A 382 7.19e+00 1cs6A b.1.1.4 21760 b.1.1.4 21761 b.1.1.4 21762 b.1.1.4 21763 1o59A 355 7.41e+00 1i8kA 107 8.43e+00 b.1.1.1 71130 1rdg 53 8.45e+00 1rb9 g.41.5.1 45221 1o75A 415 8.58e+00 b.1.20.1 81117 b.1.20.1 81118 b.120.1.1 81119 1aozA 552 8.59e+00 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1ieaA 192 8.64e+00 1iakA b.1.1.2 21631 d.19.1.1 38205 1cx4A 305 8.94e+00 b.82.3.2 59099 b.82.3.2 59100 1sgt 223 1.02e+01 5ptp b.47.1.1 25814 1a49A 530 1.03e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 4ubpC 570 1.19e+01 1ubpC b.92.1.1 28431 c.1.9.2 29053 1lurA 339 1.28e+01 b.30.5.4 84717 1xgsA 295 1.32e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1bjmA 216 1.36e+01 8fabA b.1.1.1 20524 b.1.1.2 21460 1o22A 170 1.41e+01 d.238.1.1 86557 4pep 326 1.43e+01 1smrA b.50.1.2 26843 1rwiA 270 1.43e+01 1zxq 192 1.50e+01 1zxq b.1.1.3 21657 b.1.1.4 21693 1cwvA 492 1.51e+01 1cwvA b.1.14.1 22373 b.1.14.1 22374 b.1.14.1 22375 b.1.14.1 22376 d.169.1.3 42442 1os8A 223 1.57e+01 1lwdA 413 1.63e+01 c.77.1.1 78265 1p32A 209 1.64e+01 1p32A d.25.1.1 38379 1i5pA 633 1.67e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1ewfA 456 1.83e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1fzoB 99 1.84e+01 1agdB b.1.1.2 60157 1uz5A 402 1.87e+01 2rhe 114 1.87e+01 8fabA b.1.1.1 20523 1uynX 308 1.95e+01 1fzkB 99 1.96e+01 1agdB b.1.1.2 60151 1lk2B 99 1.96e+01 1b0uA 262 1.97e+01 1b0uA c.37.1.12 32370 1p42A 270 2.04e+01 d.14.1.7 87754 d.14.1.7 87755 1nh1A 330 2.04e+01 1go3E 187 2.09e+01 b.40.4.5 83054 d.230.1.1 83055 1i8aA 189 2.15e+01 1i82A b.1.9.2 61951 1ncwL 219 2.22e+01 b.1.1.1 85557 b.1.1.2 85558 1bv1 159 2.35e+01 1bv1 d.129.3.1 41313 1i88A 389 2.42e+01 c.95.1.2 66070 c.95.1.2 66071 1rzfL 213 2.55e+01 1h9oA 112 2.73e+01 1qadA d.93.1.1 60837 1gxuA 91 2.82e+01 d.58.10.1 76378 1yna 194 2.87e+01 1axkA b.29.1.11 24335 1itwA 741 2.89e+01 c.77.1.2 76793 1rb9 53 2.90e+01 1rb9 g.41.5.1 45214 1agjA 242 3.02e+01 1agjA b.47.1.1 25827 1ako 268 3.04e+01 1ako d.151.1.1 41779 1f97A 212 3.05e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 1brfA 53 3.06e+01 1rb9 g.41.5.1 45236 1bq9A 54 3.11e+01 1rb9 g.41.5.1 45238 1lf7A 182 3.22e+01 b.60.1.1 73878 1uyrA 737 3.36e+01 1k0iA 394 3.60e+01 c.3.1.2 67942 d.16.1.2 67943 1cdcA 99 3.63e+01 1cdcA b.1.1.1 19746 1n1tA 641 3.64e+01 b.29.1.15 79821 b.68.1.1 79822 1shsA 147 3.68e+01 1shsA b.15.1.1 23675 1svpA 161 3.69e+01 1svpA b.47.1.3 26384 1b4rA 80 3.71e+01 1b4rA b.1.3.1 22072 3aprE 325 3.73e+01 2er7E b.50.1.2 26820 1mqoA 227 3.76e+01 2apr 325 3.80e+01 2er7E b.50.1.2 26819 1avwB 171 3.84e+01 1wba b.42.4.1 25599 1dg6A 191 3.88e+01 1d4vB b.22.1.1 23883 1rl2A 137 3.89e+01 1rl2A b.34.5.3 24610 b.40.4.5 25342 1s3iA 310 3.89e+01 1d7yA 408 3.91e+01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1o0pA 104 3.92e+01 d.58.7.1 86535 1mhnA 59 3.98e+01 b.34.9.1 84964 1gqpA 221 3.99e+01 b.18.1.9 70372