# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
6rxn	46	8.29e-01	1rb9	g.41.5.1	45222
1hdmA	201	1.31e+00	1iakA	b.1.1.2	21583
				d.19.1.1	38157
1kxgA	152	1.44e+00		b.22.1.1	73145
1nxiA	132	1.60e+00		d.58.47.1	86381
1prtF	98	4.33e+00	1prtF	b.40.2.1	25140
1lktA	104	4.64e+00	1lktA	b.90.1.1	28398
1bnb	38	5.04e+00	1bnb	g.9.1.1	44592
1bcpF	99	5.35e+00	1prtF	b.40.2.1	25142
1qr0A	228	7.27e+00	1qr0A	d.150.1.1	59038
				d.150.1.1	59039
1l0sA	90	7.89e+00		b.81.2.1	73408
1qexA	288	8.44e+00	1qexA	b.32.1.1	24425
1o22A	170	9.54e+00		d.238.1.1	86557
1lw6E	281	1.01e+01		c.41.1.1	74293
1l0qA	391	1.08e+01		b.1.3.1	77644
				b.69.2.3	77645
1d8hA	311	1.16e+01	1d8iA	d.63.1.1	39544
1a79A	171	1.19e+01	1a79A	c.52.2.1	33340
				d.75.1.1	39739
1js1X	324	1.37e+01		c.78.1.1	71834
				c.78.1.1	71835
1mqkL	120	1.42e+01		b.1.1.1	85054
1htrB	329	1.45e+01	1smrA		
1i8aA	189	1.46e+01	1i82A	b.1.9.2	61951
1avoA	60	1.51e+01	1avoA	a.24.8.1	16619
1f00I	282	1.95e+01	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1pylA	97	1.98e+01			
1nnlA	225	2.12e+01		c.108.1.4	85906
1hn0A	1021	2.20e+01		a.102.3.2	83616
				b.18.1.17	83617
				b.24.1.1	83618
				b.30.5.2	83619
1q0sA	259	2.33e+01		c.66.1.28	-8110
1cwvA	492	2.67e+01	1cwvA	b.1.14.1	22373
				b.1.14.1	22374
				b.1.14.1	22375
				b.1.14.1	22376
				d.169.1.3	42442
1fzyA	149	2.75e+01		d.20.1.1	65072
1lurA	339	2.81e+01		b.30.5.4	84717
1p32A	209	3.02e+01	1p32A	d.25.1.1	38379
1b4rA	80	3.04e+01	1b4rA	b.1.3.1	22072
4fiv	113	3.05e+01	1fmb	b.50.1.1	26762
1gqiA	708	3.10e+01		c.1.8.10	76279
				d.92.2.2	76280
1el6A	219	3.24e+01	1el6B	d.182.1.1	42606
1a76	326	3.28e+01	1a76	a.60.7.1	18091
				c.120.1.2	33361
1h21A	247	3.37e+01		a.138.1.3	76510
1ncwL	219	3.50e+01		b.1.1.1	85557
				b.1.1.2	85558
1n57A	291	3.58e+01		c.23.16.2	85328
1fsoA	139	3.75e+01	1rhoA	b.1.18.8	60007
3fivA	116	3.80e+01	1fmb	b.50.1.1	26768