# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 6rxn 46 3.17e-01 1rb9 g.41.5.1 45222 1kxgA 152 9.57e-01 b.22.1.1 73145 1i88A 389 4.56e+00 c.95.1.2 66070 c.95.1.2 66071 1kmtA 141 4.73e+00 b.1.18.8 77442 1o22A 170 5.44e+00 d.238.1.1 86557 1iro 54 6.03e+00 1rb9 g.41.5.1 45223 1l0sA 90 6.69e+00 b.81.2.1 73408 1nkgA 508 6.97e+00 1i8aA 189 9.21e+00 1i82A b.1.9.2 61951 1a76 326 1.06e+01 1a76 a.60.7.1 18091 c.120.1.2 33361 1hdmA 201 1.07e+01 1iakA b.1.1.2 21583 d.19.1.1 38157 1itwA 741 1.18e+01 c.77.1.2 76793 1kjvB 100 1.20e+01 b.1.1.2 77423 1k2eA 156 1.26e+01 d.113.1.1 72010 1dzkA 157 1.31e+01 1obpA b.60.1.1 27096 1o59A 355 1.33e+01 1bkb 136 1.33e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1fsoA 139 1.49e+01 1rhoA b.1.18.8 60007 1my6A 199 1.55e+01 a.2.11.1 85232 d.44.1.1 85233 1fzkB 99 1.57e+01 1agdB b.1.1.2 60151 1lk2B 99 1.57e+01 1fzoB 99 1.58e+01 1agdB b.1.1.2 60157 1b4rA 80 1.70e+01 1b4rA b.1.3.1 22072 1uyrA 737 1.85e+01 1f97A 212 1.89e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 2cuaA 135 1.94e+01 2cuaA b.6.1.2 23039 1avwB 171 2.04e+01 1wba b.42.4.1 25599 1cs6A 382 2.09e+01 1cs6A b.1.1.4 21760 b.1.1.4 21761 b.1.1.4 21762 b.1.1.4 21763 1rdg 53 2.15e+01 1rb9 g.41.5.1 45221 1a49A 530 2.23e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1shdA 107 2.44e+01 1fmk d.93.1.1 40440 1shsA 147 2.46e+01 1shsA b.15.1.1 23675 1liiA 363 2.47e+01 c.72.1.1 73921 1m26A 133 2.47e+01 1qy1A 174 2.49e+01 1dgyA 363 2.50e+01 1bx4A 1jv4A 162 2.52e+01 b.60.1.1 67343 1peeA 180 2.57e+01 1i06A 180 2.57e+01 1mup b.60.1.1 27131 1mup 166 2.60e+01 1mup b.60.1.1 27133 1p32A 209 2.60e+01 1p32A d.25.1.1 38379 1i05A 180 2.61e+01 1mup b.60.1.1 27130 1ois 223 2.70e+01 1a36A e.15.1.1 43267 1euoA 180 2.78e+01 1np1A b.60.1.1 27163 1fjgQ 105 2.78e+01 1fjfQ b.40.4.5 25352 1rb9 53 2.88e+01 1rb9 g.41.5.1 45214 1e0tA 470 3.05e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1g6gA 127 3.09e+01 1g6gA b.26.1.2 23916 1c9oA 66 3.10e+01 1mjc b.40.4.5 25325 1jj2P 95 3.13e+01 1ffkN b.34.5.1 63101 1nnwA 252 3.17e+01 d.159.1.5 80674 1sgt 223 3.18e+01 5ptp b.47.1.1 25814 1l0qA 391 3.19e+01 b.1.3.1 77644 b.69.2.3 77645 1iz6A 138 3.43e+01 b.34.5.2 76976 b.40.4.5 76977 4ubpC 570 3.55e+01 1ubpC b.92.1.1 28431 c.1.9.2 29053 1b5eA 246 3.59e+01 1b5eA d.117.1.1 41056 1b0uA 262 3.69e+01 1b0uA c.37.1.12 32370 1nepA 130 3.74e+01 b.1.18.7 80440 1erjA 393 3.87e+01 1erjA b.69.4.1 27660