# List of top-scoring protein chains for T0199.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kl9A 182 3.85e-01 b.40.4.5 72681 1udsA 255 1.19e+00 1hqcA 324 2.18e+00 1hqcA a.4.5.11 16127 c.37.1.20 32424 1ua4A 455 3.93e+00 1gs3A 131 4.40e+00 d.17.4.3 76327 1byqA 228 5.08e+00 1yer d.122.1.1 41100 1udnA 255 5.50e+00 1j3kC 328 5.98e+00 d.117.1.1 84072 1obbA 480 6.02e+00 c.2.1.5 86760 d.162.1.2 86761 1q46A 175 6.02e+00 1gjwA 637 6.38e+00 b.71.1.1 60582 c.1.8.1 60583 1osfA 215 7.21e+00 d.122.1.1 87380 1uj1A 306 7.45e+00 1q2wA 308 7.47e+00 b.47.1.4 88355 1ngvB 442 7.71e+00 c.111.1.2 85699 1udqA 255 7.99e+00 1dmnA 131 8.18e+00 1opy d.17.4.3 38115 1r4mB 431 8.40e+00 1dmmA 131 8.59e+00 1opy d.17.4.3 38114 1ogxA 131 9.14e+00 d.17.4.3 87002 1udoA 255 9.77e+00 1j5yA 187 9.78e+00 a.4.5.1 71592 d.94.2.1 71593 1l2lA 457 9.94e+00 c.72.1.3 77656 1cqsA 131 1.01e+01 d.17.4.3 83165 1qdlA 422 1.03e+01 1qdlA d.161.1.1 42088 1in6A 334 1.07e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1in4A 334 1.07e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1in5A 334 1.09e+01 1hqcA a.4.5.11 62599 c.37.1.20 62600 1j7kA 334 1.10e+01 1hqcA a.4.5.11 62695 c.37.1.20 62696 1p58A 495 1.11e+01 1sq6A 253 1.17e+01 2phlA 397 1.17e+01 1dgwA b.82.1.2 28082 b.82.1.2 28083 1e97A 131 1.18e+01 d.17.4.3 64803 1in8A 334 1.21e+01 1hqcA a.4.5.11 62605 c.37.1.20 62606 1eakA 421 1.25e+01 a.20.1.2 70093 d.92.1.11 70094 g.14.1.2 70095 g.14.1.2 70096 g.14.1.2 70097 1q1gA 276 1.38e+01 1mnmA 100 1.43e+01 1mnmA d.88.1.1 40232 1in7A 334 1.47e+01 1hqcA a.4.5.11 62603 c.37.1.20 62604 1jlwA 219 1.47e+01 a.45.1.1 71741 c.47.1.5 71742 1f6aA 176 1.48e+01 2fcbA b.1.1.4 21791 b.1.1.4 21792 1c7hA 131 1.49e+01 1opy d.17.4.3 38117 1b78A 193 1.56e+01 1b78A c.51.4.1 33221 1f2qA 176 1.57e+01 2fcbA b.1.1.4 21789 b.1.1.4 21790 1j88A 172 1.59e+01 2fcbA b.1.1.4 62717 b.1.1.4 62718 1dmqA 131 1.59e+01 1opy d.17.4.3 38116 1skyE 473 1.60e+01 1skyE a.69.1.1 18314 b.49.1.1 26479 c.37.1.11 32359 1eqpA 394 1.61e+01 1cz1A c.1.8.3 28812 1j87A 172 1.61e+01 2fcbA b.1.1.4 62715 b.1.1.4 62716 1f9uA 347 1.65e+01 1bg2 c.37.1.9 59744 1oh0A 131 1.66e+01 d.17.4.3 87004 3kar 346 1.77e+01 1bg2 c.37.1.9 32198 1eqcA 394 1.80e+01 1cz1A c.1.8.3 28811 1lwjA 441 1.80e+01 b.71.1.1 74303 c.1.8.1 74304 1tml 286 1.90e+01 1tml c.6.1.1 30656 1f9vA 347 1.90e+01 1bg2 c.37.1.9 59745 1fsu 491 2.38e+01 1auk c.76.1.2 35032 1f9tA 358 2.42e+01 1bg2 c.37.1.9 59743 1ea2A 131 2.44e+01 d.17.4.3 64860 1k41A 131 2.47e+01 d.17.4.3 77252 1f9wA 347 2.52e+01 1bg2 c.37.1.9 59746 1q8iA 783 2.53e+01 1ck7A 631 2.62e+01 1ck7A a.20.1.2 58969 b.66.1.1 27538 d.92.1.11 58970 g.14.1.2 44674 g.14.1.2 44675 g.14.1.2 44676 2azoA 232 2.69e+01 1azo c.52.1.14 33330 1gqiA 708 2.72e+01 c.1.8.10 76279 d.92.2.2 76280 1cyg 680 2.77e+01 1cxlA b.1.18.2 21843 b.3.1.1 22512 b.71.1.1 27750 c.1.8.1 28737 1ezsC 223 2.83e+01 5ptp b.47.1.2 25989 1h41A 708 2.96e+01 c.1.8.10 83472 d.92.2.2 83473 1a6dA 545 2.97e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1qk5A 233 3.17e+01 1qk3A c.61.1.1 34035 1qs8A 329 3.22e+01 1smrA b.50.1.2 26887 1j2oA 114 3.61e+01 g.39.1.3 84020 g.39.1.3 84021 1os9A 165 3.66e+01 1dbrA 231 3.66e+01 1qk3A c.61.1.1 34041 1trmA 223 3.72e+01 5ptp b.47.1.2 25987 1fsgA 233 3.72e+01 1qk3A c.61.1.1 34029 1ciu 683 3.79e+01 1cxlA b.1.18.2 21852 b.3.1.1 22521 b.71.1.1 27759 c.1.8.1 28746 1pmi 440 3.92e+01 1pmi b.82.1.3 28114 1f5rA 231 3.94e+01 5ptp b.47.1.2 59654 1g8sA 230 3.97e+01