PFRMAT RR TARGET T0199 AUTHOR 4204-4258-2837 REMARK From group SAM-TO4-hand under the direction of REMARK Kevin Karplus. REMARK Project by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The number of predictions is limited to .5*sequence_length REMARK or to a limited set of high scoring pairs. REMARK METHOD The predictor is an artificial neural network METHOD using 280 inputs. METHOD Input includes separation and sequence length, corrected METHOD mutual information between columns (M. Cline) and METHOD an e-value measure of correlation between columns (K Karplus) METHOD NN: NN280-240n300.net.28 METHOD Other inputs are from alignments and METHOD secondary predictions from SAM-t2k and SAM-t04 of METHOD University of California, Santa Cruz MODEL 1 MRRLNRKNNEALKKLNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEF SSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGLRFYYEEMLKISKETSE ADLAVETFKSMPLADPEKVLFLAGNLLARLTEGYVLIERPNTRDLKILRV MLIPVSEDYLIFSILTEFGVSKVTPIKTQERLNWEEIERQLNFLLRGRTV GEVLMGKIESLKGSGFLRLIESLIGETVERYLDAGLENLLKDETLTLEDI RNLLEEVKDQKFLESLVGEGITVRIGREIGRKKLEKFAVFSGKYFKGESP IGSVYLFTSKVTKYDRNHRVFEYILNRLSEYFTSTSRR 57 71 0 8 0.78455 58 73 0 8 0.7837 57 73 0 8 0.77435 58 74 0 8 0.76585 41 73 0 8 0.7599 59 73 0 8 0.7565 58 72 0 8 0.7514 39 73 0 8 0.7514 38 74 0 8 0.75055 57 74 0 8 0.7497 19 58 0 8 0.7412 63 73 0 8 0.73865 53 74 0 8 0.73525 39 72 0 8 0.73015 39 75 0 8 0.7293 52 71 0 8 0.7174 38 73 0 8 0.71315 53 73 0 8 0.6987 39 74 0 8 0.697 39 162 0 8 0.6596 63 74 0 8 0.6562 53 75 0 8 0.6545 38 77 0 8 0.6528 38 53 0 8 0.65025 38 75 0 8 0.64345 53 161 0 8 0.6375 52 74 0 8 0.6256 58 70 0 8 0.6239 57 75 0 8 0.61965 39 77 0 8 0.612 77 87 0 8 0.59925 38 88 0 8 0.59245 39 87 0 8 0.59075 40 74 0 8 0.5865 40 73 0 8 0.58395 91 165 0 8 0.5729 53 72 0 8 0.5729 64 74 0 8 0.5661 52 75 0 8 0.56355 140 162 0 8 0.56185 38 52 0 8 0.56185 39 53 0 8 0.55505 53 150 0 8 0.5525 73 126 0 8 0.5474 39 130 0 8 0.5457 63 72 0 8 0.5406 37 88 0 8 0.5406 63 87 0 8 0.5355 39 76 0 8 0.5338 57 70 0 8 0.52615 85 128 0 8 0.5236 36 76 0 8 0.5168 36 77 0 8 0.50915 18 58 0 8 0.50915 57 196 0 8 0.5066 38 72 0 8 0.5066 53 87 0 8 0.50405 77 150 0 8 0.50235 40 61 0 8 0.4998 53 77 0 8 0.4947 51 75 0 8 0.49215 123 200 0 8 0.4845 19 69 0 8 0.4845 36 85 0 8 0.47685 73 123 0 8 0.47175 36 53 0 8 0.46665 42 74 0 8 0.4641 150 163 0 8 0.46155 77 88 0 8 0.4539 58 195 0 8 0.45135 123 223 0 8 0.4488 63 77 0 8 0.4488 52 70 0 8 0.4488 42 72 0 8 0.4488 39 195 0 8 0.4488 73 85 0 8 0.44625 52 77 0 8 0.44625 70 108 0 8 0.4437 39 88 0 8 0.4437 73 150 0 8 0.43945 77 116 0 8 0.4318 73 195 0 8 0.4318 70 109 0 8 0.4318 57 128 0 8 0.4318 73 140 0 8 0.4267 56 75 0 8 0.4267 53 86 0 8 0.4267 140 161 0 8 0.42075 163 275 0 8 0.4182 58 131 0 8 0.41055 63 88 0 8 0.40375 38 128 0 8 0.39865 53 83 0 8 0.3961 85 140 0 8 0.39355 58 168 0 8 0.39355 128 140 0 8 0.38845 74 109 0 8 0.38845 91 130 0 8 0.38335 18 63 0 8 0.38335 63 75 0 8 0.3808 39 161 0 8 0.37315 36 74 0 8 0.37315 53 134 0 8 0.36805 85 251 0 8 0.3655 18 72 0 8 0.36295 130 140 0 8 0.3604 73 87 0 8 0.3604 53 70 0 8 0.3604 40 173 0 8 0.3604 19 57 0 8 0.3604 39 223 0 8 0.35785 86 150 0 8 0.3553 70 196 0 8 0.3553 39 70 0 8 0.3553 94 130 0 8 0.35275 18 74 0 8 0.35275 72 195 0 8 0.3502 63 86 0 8 0.3502 41 85 0 8 0.3502 19 70 0 8 0.3502 59 72 0 8 0.34765 174 200 0 8 0.34595 71 196 0 8 0.34595 41 61 0 8 0.34595 38 87 0 8 0.34595 59 74 0 8 0.3383 18 48 0 8 0.3383 168 180 0 8 0.33575 83 128 0 8 0.33575 250 275 0 8 0.3332 31 53 0 8 0.3332 63 128 0 8 0.3281 38 70 0 8 0.3264 53 160 0 8 0.31875 39 128 0 8 0.31875 80 134 0 8 0.3162 73 151 0 8 0.3162 18 68 0 8 0.3162 31 72 0 8 0.31195 27 147 0 8 0.31195 120 162 0 8 0.30685 136 273 0 8 0.3026 68 195 0 8 0.3026 42 55 0 8 0.3026 160 171 0 8 0.30005 124 163 0 8 0.30005 77 123 0 8 0.30005 77 109 0 8 0.30005 51 74 0 8 0.30005 174 251 0 8 0.2975 73 162 0 8 0.2975 36 88 0 8 0.2975 70 132 0 8 0.29495 38 153 0 8 0.29495 26 68 0 8 0.29495 74 85 0 8 0.29325 58 134 0 8 0.29325 190 222 0 8 0.2907 73 168 0 8 0.2907 63 150 0 8 0.2907 53 128 0 8 0.2907 40 109 0 8 0.2907 74 148 0 8 0.28815 72 169 0 8 0.28815 70 134 0 8 0.28815 51 77 0 8 0.28815 148 249 0 8 0.28645 59 253 0 8 0.28645 58 169 0 8 0.2839 40 75 0 8 0.2839 39 147 0 8 0.2839 75 148 0 8 0.28135 70 133 0 8 0.28135 53 68 0 8 0.28135 127 187 0 8 0.27965 38 116 0 8 0.27965 26 137 0 8 0.2771 150 273 0 8 0.27455 72 124 0 8 0.27455 40 70 0 8 0.27455 18 31 0 8 0.27455 123 166 0 8 0.27285 87 150 0 8 0.27285 74 116 0 8 0.27285 39 68 0 8 0.27285 31 73 0 8 0.27285 29 75 0 8 0.2686 305 324 0 8 0.26605 160 223 0 8 0.26605 128 171 0 8 0.26605 74 150 0 8 0.26605 119 136 0 8 0.2635 59 87 0 8 0.2635 72 87 0 8 0.2618 70 130 0 8 0.2618 39 116 0 8 0.25755 38 85 0 8 0.255 123 150 0 8 0.2533 90 234 0 8 0.2533 74 128 0 8 0.2533 58 87 0 8 0.2533 193 205 0 8 0.25075 133 171 0 8 0.25075 61 77 0 8 0.25075 41 70 0 8 0.25075 37 85 0 8 0.25075 31 63 0 8 0.25075 163 231 0 8 0.24905 130 160 0 8 0.24905 120 130 0 8 0.2465 80 133 0 8 0.2465 31 58 0 8 0.2448 42 68 0 8 0.24225 38 195 0 8 0.24055 38 61 0 8 0.24055 25 140 0 8 0.24055 147 186 0 8 0.238 78 187 0 8 0.238 74 175 0 8 0.238 31 150 0 8 0.238 140 253 0 8 0.2363 26 58 0 8 0.2363 172 234 0 8 0.2346 83 150 0 8 0.2346 73 90 0 8 0.2346 116 134 0 8 0.23205 57 94 0 8 0.23205 48 68 0 8 0.23205 39 253 0 8 0.2278 38 57 0 8 0.2261 174 201 0 8 0.2244 72 150 0 8 0.2244 153 203 0 8 0.22185 128 271 0 8 0.22015 75 85 0 8 0.22015 70 191 0 8 0.22015 63 194 0 8 0.22015 39 109 0 8 0.22015 55 75 0 8 0.2142 86 134 0 8 0.2125 60 86 0 8 0.2125 36 239 0 8 0.2125 122 224 0 8 0.2108 88 216 0 8 0.2108 87 134 0 8 0.2108 18 59 0 8 0.2108 119 153 0 8 0.2091 53 116 0 8 0.2091 80 94 0 8 0.20655 26 75 0 8 0.20655 91 150 0 8 0.20485 58 191 0 8 0.20315 36 150 0 8 0.20315 35 70 0 8 0.20315 232 263 0 8 0.20145 53 123 0 8 0.20145 52 128 0 8 0.20145 134 150 0 8 0.19975 74 87 0 8 0.19975 61 74 0 8 0.19975 73 148 0 8 0.1972 61 173 0 8 0.1972 149 174 0 8 0.1955 63 83 0 8 0.1955 36 116 0 8 0.1955 91 135 0 8 0.1938 87 130 0 8 0.1938 83 187 0 8 0.1938 58 68 0 8 0.1938 53 162 0 8 0.1938 176 235 0 8 0.1921 149 159 0 8 0.1921 60 74 0 8 0.1921 74 126 0 8 0.1904 41 77 0 8 0.1904 29 70 0 8 0.1904 152 174 0 8 0.1887 43 59 0 8 0.1887 36 128 0 8 0.1887 92 162 0 8 0.187 83 165 0 8 0.187 74 88 0 8 0.187 70 174 0 8 0.187 31 74 0 8 0.187 73 234 0 8 0.1853 59 70 0 8 0.1836 53 267 0 8 0.1836 40 58 0 8 0.1836 38 55 0 8 0.1836 29 58 0 8 0.1836 21 153 0 8 0.1836 128 199 0 8 0.1819 94 138 0 8 0.1819 58 80 0 8 0.1819 57 130 0 8 0.1819 88 120 0 8 0.1802 68 161 0 8 0.1802 53 137 0 8 0.1802 200 251 0 8 0.1785 91 134 0 8 0.1785 75 134 0 8 0.1785 70 137 0 8 0.1785 58 274 0 8 0.1785 40 77 0 8 0.1785 178 279 0 8 0.1768 70 274 0 8 0.1768 70 128 0 8 0.1768 70 80 0 8 0.1768 25 171 0 8 0.1751 150 176 0 8 0.1734 73 128 0 8 0.1734 133 240 0 8 0.1717 77 195 0 8 0.17 31 68 0 8 0.17 END