Best Alignments for T0199

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1q48A/T0199-1q48A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1q48A/T0199-1q48A-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.6068e+001.1428e-01 unknown_sccs
1kk8B/T0199-1kk8B-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1kk8B/T0199-1kk8B-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 7.4450e+009.8114e-01 a.39.1.5
1gs3A/T0199-1gs3A-t2k-local-adpstyle5.a2m 1gs3A/T0199-1gs3A-t2k-local-adpstyle5.al 1.0180e+017.2240e+00 d.17.4.3
1scmB/T0199-1scmB-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1scmB/T0199-1scmB-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.1922e+012.2274e+00 1wdcB a.39.1.5
1fiuA/T0199-1fiuA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1fiuA/T0199-1fiuA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.5140e+016.1602e+00 1fiuA c.52.1.10
1p58A/T0199-1p58A-t2k-global-adpstyle1.a2m 1p58A/T0199-1p58A-t2k-global-adpstyle1.al 1.7026e+016.2560e+00 i.17.1.1
1dmnA/1opy-T0199-fssp-local-adpstyle5.a2m 1dmnA/1opy-T0199-fssp-local-adpstyle5.al 1.7430e+015.7743e+00 1opy d.17.4.3
1j3kC/T0199-1j3kC-t2k-local-adpstyle5.a2m 1j3kC/T0199-1j3kC-t2k-local-adpstyle5.al 2.0588e+011.6229e+01 d.117.1.1
1e97A/T0199-1e97A-t2k-local-adpstyle1.a2m 1e97A/T0199-1e97A-t2k-local-adpstyle1.al 2.1612e+011.7157e+01 d.17.4.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001