# List of top-scoring protein chains for T0199.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gs3A 131 1.29e+00 d.17.4.3 76327 1jv2A 957 2.42e+00 b.1.15.1 67334 b.1.15.1 67335 b.1.15.1 67336 b.69.8.1 67337 1p58A 495 2.79e+00 i.17.1.1 -13103 1dmnA 131 2.89e+00 1opy d.17.4.3 38115 1fiuA 286 3.64e+00 1fiuA c.52.1.10 33317 1j3kC 328 3.71e+00 d.117.1.1 84072 1dmmA 131 3.81e+00 1opy d.17.4.3 38114 1e97A 131 3.99e+00 d.17.4.3 64803 1uaaA 673 4.00e+00 1pjr c.37.1.19 32401 c.37.1.19 32402 1j88A 172 4.12e+00 2fcbA b.1.1.4 62717 b.1.1.4 62718 1j87A 172 4.14e+00 2fcbA b.1.1.4 62715 b.1.1.4 62716 1f2qA 176 4.20e+00 2fcbA b.1.1.4 21789 b.1.1.4 21790 1ogxA 131 4.57e+00 d.17.4.3 87002 1cqsA 131 4.94e+00 d.17.4.3 83165 1f6aA 176 5.24e+00 2fcbA b.1.1.4 21791 b.1.1.4 21792 1m1hA 248 6.07e+00 b.114.1.1 78415 d.58.42.1 78416 1lf9B 674 6.22e+00 a.102.1.5 77924 b.30.5.5 77925 1lf6A 684 6.23e+00 a.102.1.5 77918 b.30.5.5 77919 1dmqA 131 6.58e+00 1opy d.17.4.3 38116 1oh0A 131 8.70e+00 d.17.4.3 87004 1qdlA 422 8.96e+00 1qdlA d.161.1.1 42088 1c7hA 131 1.05e+01 1opy d.17.4.3 38117 1ea2A 131 1.23e+01 d.17.4.3 64860 1edg 380 1.23e+01 1edg c.1.8.3 28807 1gw0A 559 1.24e+01 b.6.1.3 70623 b.6.1.3 70624 b.6.1.3 70625 1uylA 236 1.27e+01 1byqA 228 1.29e+01 1yer d.122.1.1 41100 1osfA 215 1.45e+01 d.122.1.1 87380 1k41A 131 1.45e+01 d.17.4.3 77252 1kl9A 182 1.45e+01 b.40.4.5 72681 1oh4A 179 1.49e+01 b.18.1.18 -3123 1ldg 316 2.04e+01 1ceqA c.2.1.5 30165 d.162.1.1 42132 1og0A 370 2.07e+01 c.1.10.4 -5532 1of8A 370 2.08e+01 c.1.10.4 -5508 1qm4A 396 2.10e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1n7vA 555 2.21e+01 b.126.1.1 85377 1kte 105 2.32e+01 1kte c.47.1.1 32771 1ly7A 121 2.38e+01 d.82.2.1 74339 2cavA 445 2.42e+01 1dgwA b.82.1.2 28094 b.82.1.2 28095 1n7uA 554 2.44e+01 b.126.1.1 85376 1r0vA 305 2.46e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1ua4A 455 2.51e+01 c.72.1.3 -8416 1ekgA 127 2.61e+01 1dlxA d.82.2.1 40021 1npmA 225 2.61e+01 5ptp b.47.1.2 26070 1lt8A 406 2.75e+01 c.1.26.1 78186 1jmxB 349 2.80e+01 b.69.2.2 66906 1v6fA 151 2.89e+01 1ov4A 293 3.03e+01 c.37.1.5 -7023 1gawA 314 3.04e+01 1fnc b.43.4.2 25643 c.25.1.1 31533 1nf2A 268 3.06e+01 c.108.1.10 -6842 1umyA 407 3.23e+01 c.1.26.1 -5656 1r4vA 171 3.27e+01 unknown_sccs -1221 1j99A 293 3.30e+01 c.37.1.5 71618 1mzpA 217 3.48e+01 e.24.1.1 79710 2cevA 299 3.56e+01 1d3vA c.42.1.1 32576 1efhA 292 3.60e+01 1aquA c.37.1.5 31948 1dflW 139 3.75e+01 1wdcB a.39.1.5 17306 1wdcB 156 3.78e+01 1wdcB a.39.1.5 17302 1kk8B 139 3.84e+01 a.39.1.5 77430 1scmB 145 3.99e+01 1wdcB a.39.1.5 17304