# List of top-scoring protein chains for T0199.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1p58A 495 4.87e+00 i.17.1.1 -13103 1gs3A 131 6.03e+00 d.17.4.3 76327 1dmnA 131 1.13e+01 1opy d.17.4.3 38115 1r4mB 431 1.22e+01 c.111.1.2 -8268 1ngvB 442 1.26e+01 c.111.1.2 85699 1dmmA 131 1.34e+01 1opy d.17.4.3 38114 1gjwA 637 1.42e+01 b.71.1.1 60582 c.1.8.1 60583 1s1iB 253 1.42e+01 1mzpA 217 1.58e+01 e.24.1.1 79710 1e97A 131 1.58e+01 d.17.4.3 64803 1g8sA 230 1.63e+01 c.66.1.3 -8047 1ll2A 333 1.71e+01 c.68.1.14 74005 1ll0A 339 1.71e+01 c.68.1.14 73995 1gvfA 286 1.75e+01 c.1.10.2 70599 1dseA 292 1.80e+01 1ryc a.93.1.1 59130 1v6fA 151 1.90e+01 1aj8A 371 1.91e+01 1aj8A a.103.1.1 18900 1ogxA 131 2.04e+01 d.17.4.3 87002 1cqsA 131 2.06e+01 d.17.4.3 83165 3ccx 294 2.12e+01 1ryc a.93.1.1 18637 1kl9A 182 2.18e+01 b.40.4.5 72681 5ccp 296 2.23e+01 1ryc a.93.1.1 18615 1c1hA 310 2.24e+01 1ak1 c.92.1.1 35593 1jv2A 957 2.27e+01 b.1.15.1 67334 b.1.15.1 67335 b.1.15.1 67336 b.69.8.1 67337 1eovA 487 2.27e+01 1b8aA b.40.4.1 25239 d.104.1.1 40760 1asyA 490 2.28e+01 1b8aA b.40.4.1 25242 d.104.1.1 40763 1dozA 309 2.29e+01 1ak1 c.92.1.1 35592 1c9eA 306 2.40e+01 1ak1 c.92.1.1 35595 1ccj 294 2.47e+01 1ryc a.93.1.1 18644 1mnmA 100 2.47e+01 1mnmA d.88.1.1 40232 1j3kC 328 2.65e+01 d.117.1.1 84072 1cpg 296 2.76e+01 1ryc a.93.1.1 18628 1lf9B 674 2.84e+01 a.102.1.5 77924 b.30.5.5 77925 1lf6A 684 2.85e+01 a.102.1.5 77918 b.30.5.5 77919 1uaaA 673 2.88e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 1ccl 291 2.92e+01 1ryc a.93.1.1 18608 1gc5A 467 2.94e+01 1gc5A c.72.1.3 60429 1cpe 296 2.95e+01 1ryc a.93.1.1 18623 1ccc 297 2.95e+01 1ryc a.93.1.1 18611 4ccp 296 3.00e+01 1ryc a.93.1.1 18626 1cmu 294 3.03e+01 1ryc a.93.1.1 18630 1ccb 297 3.04e+01 1ryc a.93.1.1 18631 1ryc 294 3.05e+01 1ryc a.93.1.1 18601 2ccp 296 3.08e+01 1ryc a.93.1.1 18610 1cca 297 3.08e+01 1ryc a.93.1.1 18602 1dcc 296 3.10e+01 1ryc a.93.1.1 18613 1dmqA 131 3.10e+01 1opy d.17.4.3 38116 1ac4 294 3.11e+01 1ryc a.93.1.1 18657 1ccp 296 3.11e+01 1ryc a.93.1.1 18614 1cck 291 3.13e+01 1ryc a.93.1.1 18622 1bem 291 3.19e+01 1ryc a.93.1.1 18635 2azoA 232 3.19e+01 1azo c.52.1.14 33330 1f9rA 70 3.21e+01 d.9.1.1 -8943 1b9lA 120 3.22e+01 1b9lA d.96.1.3 40665 1im4A 221 3.29e+01 unknown_sccs 62581 2cep 296 3.29e+01 1ryc a.93.1.1 18633 1a2f 291 3.30e+01 1ryc a.93.1.1 18619 1ldg 316 3.34e+01 1ceqA c.2.1.5 30165 d.162.1.1 42132 1kxmA 290 3.36e+01 a.93.1.1 73156 1bej 291 3.36e+01 1ryc a.93.1.1 18638 1ds4A 292 3.41e+01 1ryc a.93.1.1 59129 6ccp 296 3.41e+01 1ryc a.93.1.1 18617 1a2g 291 3.44e+01 1ryc a.93.1.1 18620 1kxnA 289 3.46e+01 a.93.1.1 73157 1bes 291 3.51e+01 1ryc a.93.1.1 18612 1c7hA 131 3.51e+01 1opy d.17.4.3 38117 1ccg 291 3.52e+01 1ryc a.93.1.1 18627 1bj9 291 3.55e+01 1ryc a.93.1.1 18636 1a6dA 545 3.61e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1jlwA 219 3.69e+01 a.45.1.1 71741 c.47.1.5 71742 1oh0A 131 3.71e+01 d.17.4.3 87004 1j09A 468 3.78e+01 a.97.1.1 77025 c.26.1.1 77026 1of8A 370 3.78e+01 c.1.10.4 -5508 4ccx 294 3.78e+01 1ryc a.93.1.1 18606 1og0A 370 3.79e+01 c.1.10.4 -5532