# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2phlA 397 8.72e-01 1dgwA b.82.1.2 28082 b.82.1.2 28083 1q48A 134 2.20e+00 unknown_sccs -9776 1vhxA 150 3.87e+00 unknown_sccs -7663 1exqA 154 5.07e+00 1b9dA c.55.3.2 33646 1hlrA 907 5.10e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1alo 907 6.09e+00 1alo 1pi1A 185 6.17e+00 unknown_sccs -762 1mdl 359 6.56e+00 2mnr c.1.11.2 29247 d.54.1.1 38891 1itg 166 8.08e+00 1b9dA c.55.3.2 33661 1oz9A 150 8.19e+00 unknown_sccs -10588 1ikpA 613 8.28e+00 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1vi9A 299 8.62e+00 c.72.1.5 -8393 1lshB 319 8.86e+00 f.7.1.1 74245 1d2eA 397 9.15e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1gln 468 9.44e+00 1gln a.97.1.1 18752 c.26.1.1 31588 1hyvA 166 1.15e+01 1b9dA c.55.3.2 61424 1nnhA 294 1.20e+01 d.104.1.1 -10772 1jq5A 370 1.21e+01 e.22.1.2 67084 1kk8B 139 1.22e+01 a.39.1.5 77430 1i6iA 366 1.29e+01 1bg2 c.37.1.9 61844 1fsz 372 1.30e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1a4sA 503 1.44e+01 1bpwA c.82.1.1 35361 1r1dA 247 1.46e+01 unknown_sccs -8335 2mnr 357 1.47e+01 2mnr c.1.11.2 29245 d.54.1.1 38889 1wdcB 156 1.56e+01 1wdcB a.39.1.5 17302 1ezvB 352 1.65e+01 1ezvB d.185.1.1 59543 d.185.1.1 59544 1k32A 1045 1.66e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1ry9A 145 1.73e+01 d.198.1.1 -9020 1n9lA 109 1.75e+01 d.110.3.6 85468 1qnxA 209 1.81e+01 1qnxA d.111.1.1 40914 1eyhA 144 1.81e+01 1eduA a.118.9.1 19214 1moq 368 1.82e+01 1moq c.80.1.1 35302 1bj7 156 1.86e+01 1bj7 b.60.1.1 27113 1f2tB 148 2.10e+01 1f2tB 1nu5A 370 2.16e+01 c.1.11.2 -5565 d.54.1.1 -9823 1iupA 282 2.16e+01 c.69.1.10 76815 1khiA 176 2.17e+01 b.34.5.2 77408 b.40.4.5 77409 1bob 320 2.28e+01 1bob d.108.1.1 40816 1iz0A 302 2.30e+01 b.35.1.2 83821 c.2.1.1 83822 1mngA 203 2.34e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1bl3A 160 2.37e+01 1b9dA c.55.3.2 33655 1bia 321 2.47e+01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1kb9B 352 2.48e+01 d.185.1.1 77313 d.185.1.1 77314 1o04A 500 2.51e+01 c.82.1.1 86508 1nt4A 391 2.53e+01 c.60.1.2 -7942 1ur5A 309 2.68e+01 c.2.1.5 -5910 d.162.1.1 -11477 1k8kA 418 2.86e+01 c.55.1.1 68305 c.55.1.1 68306 1dozA 309 2.89e+01 1ak1 c.92.1.1 35592 1mgtA 174 2.96e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 5rubA 490 3.07e+01 1burA c.1.14.1 29382 d.58.9.1 39288 1eu3A 210 3.43e+01 1an8 b.40.2.2 25206 d.15.6.1 37795 1ogsA 497 3.43e+01 b.71.1.2 86997 c.1.8.3 86998 1dm0A 287 3.59e+01 1dm0A d.165.1.2 42227 1mpxA 615 3.66e+01 b.18.1.13 85041 c.69.1.21 85042 1rvkA 382 3.70e+01 c.1.11.2 -5568 d.54.1.1 -9826 1f44A 324 3.84e+01 a.60.9.1 64982 d.163.1.1 64983 1ny6A 267 3.85e+01 c.37.1.20 -7221 1o7zA 77 3.89e+01 d.9.1.1 86660 1ebmA 317 3.90e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1jkvA 266 3.91e+01 unknown_sccs 71719 1kq3A 376 3.97e+01 e.22.1.2 68790