# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q48A 134 6.76e-01 unknown_sccs -9776 1rvkA 382 7.20e-01 c.1.11.2 -5568 d.54.1.1 -9826 1jq5A 370 9.36e-01 e.22.1.2 67084 1vi9A 299 9.89e-01 c.72.1.5 -8393 1bj7 156 1.29e+00 1bj7 b.60.1.1 27113 1lshB 319 1.35e+00 f.7.1.1 74245 1jpmA 366 1.48e+00 c.1.11.2 67031 d.54.1.1 67032 1ikpA 613 1.54e+00 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1gln 468 1.87e+00 1gln a.97.1.1 18752 c.26.1.1 31588 1mdl 359 2.16e+00 2mnr c.1.11.2 29247 d.54.1.1 38891 1alo 907 2.27e+00 1alo 1i6iA 366 2.48e+00 1bg2 c.37.1.9 61844 1hlrA 907 2.80e+00 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1nu5A 370 3.43e+00 c.1.11.2 -5565 d.54.1.1 -9823 1dkzA 219 3.57e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1ec7A 446 3.65e+00 1bqg c.1.11.2 29218 d.54.1.1 38862 1n9lA 109 3.85e+00 d.110.3.6 85468 1a4sA 503 4.02e+00 1bpwA c.82.1.1 35361 1j09A 468 4.19e+00 a.97.1.1 77025 c.26.1.1 77026 1fsz 372 4.62e+00 1fsz c.32.1.1 31750 d.79.2.1 39802 1ur5A 309 5.07e+00 c.2.1.5 -5910 d.162.1.1 -11477 2mnr 357 5.39e+00 2mnr c.1.11.2 29245 d.54.1.1 38889 1hf8A 289 5.41e+00 1hg5A unknown_sccs -399 unknown_sccs -1628 1ebmA 317 6.82e+00 1ebmA a.96.1.3 18751 d.129.1.2 41300 1d2eA 397 7.02e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1vhxA 150 7.14e+00 unknown_sccs -7663 1kq3A 376 7.36e+00 e.22.1.2 68790 1oz9A 150 7.53e+00 unknown_sccs -10588 1g0oA 283 7.75e+00 1ybvA c.2.1.2 60181 1pysA 350 7.76e+00 1pysA d.104.1.1 40775 1g8yA 279 7.85e+00 1g8yA c.37.1.11 32302 1khiA 176 7.93e+00 b.34.5.2 77408 b.40.4.5 77409 1nt4A 391 8.86e+00 c.60.1.2 -7942 1ezwA 349 9.83e+00 1ezwA c.1.16.3 29558 1nlfA 279 1.05e+01 c.37.1.11 85850 1q35A 320 1.06e+01 c.94.1.1 -8658 1fo4A 1332 1.07e+01 a.56.1.1 17910 d.15.4.2 37695 d.41.1.1 38586 d.87.2.1 40227 d.133.1.1 41416 d.145.1.3 41758 1m3qA 317 1.07e+01 a.96.1.3 -1288 d.129.1.2 -11006 1f2tB 148 1.13e+01 1f2tB 1q6hA 224 1.29e+01 d.26.1.1 -9487 1d2nA 272 1.35e+01 1d2nA c.37.1.20 32428 1dm0A 287 1.39e+01 1dm0A d.165.1.2 42227 1kb9A 431 1.39e+01 d.185.1.1 77311 d.185.1.1 77312 1k32A 1045 1.43e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1ezvA 430 1.45e+01 1be3A d.185.1.1 59541 d.185.1.1 59542 1pt6A 213 1.47e+01 c.62.1.1 -7975 2phlA 397 1.53e+01 1dgwA b.82.1.2 28082 b.82.1.2 28083 1v97A 1332 1.54e+01 5rubA 490 1.54e+01 1burA c.1.14.1 29382 d.58.9.1 39288 1j54A 186 1.55e+01 c.55.3.5 77077 1ry9A 145 1.63e+01 d.198.1.1 -9020 1lmb3 92 1.63e+01 1lmb3 1f44A 324 1.64e+01 a.60.9.1 64982 d.163.1.1 64983 4crxA 322 1.65e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1lt5D 103 1.66e+01 3chbD b.40.2.1 24875 1nsf 273 1.81e+01 1d2nA c.37.1.20 32429 1wdcB 156 1.87e+01 1wdcB a.39.1.5 17302 1hn2A 159 1.94e+01 b.60.1.1 65890 1gt1A 159 1.94e+01 b.60.1.1 -4436 1byqA 228 1.95e+01 1yer d.122.1.1 41100 1r71A 178 1.95e+01 1lwdA 413 2.09e+01 c.77.1.1 78265 1b7yA 350 2.09e+01 1pysA d.104.1.1 40776 1hr6A 475 2.15e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1uteA 313 2.16e+01 1uteA d.159.1.1 42078 3chbD 104 2.26e+01 3chbD b.40.2.1 24970 1p36A 164 2.28e+01 d.2.1.3 -8840 1fiuA 286 2.32e+01 1fiuA c.52.1.10 33317 1zymA 258 2.34e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1obpA 159 2.34e+01 1obpA b.60.1.1 27092 1on2A 142 2.34e+01 a.4.5.24 87103 a.76.1.1 87104 1dozA 309 2.36e+01 1ak1 c.92.1.1 35592 1ptmA 329 2.37e+01 unknown_sccs -8456 1itg 166 2.37e+01 1b9dA c.55.3.2 33661 1djrD 103 2.41e+01 3chbD b.40.2.1 24865 1iz0A 302 2.42e+01 b.35.1.2 83821 c.2.1.1 83822 1om1A 332 2.42e+01 d.144.1.7 -11318 1fiqC 763 2.42e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1zpdA 568 2.45e+01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1ihrA 76 2.47e+01 1ihrA d.212.1.2 62392 1eyhA 144 2.51e+01 1eduA a.118.9.1 19214 1m2rA 327 2.54e+01 d.144.1.7 84760 1o04A 500 2.55e+01 c.82.1.1 86508 1khdA 345 2.57e+01 a.46.2.1 77400 c.27.1.1 77401 1ktaA 365 2.63e+01 e.17.1.1 77533 1allA 160 2.64e+01 1qgwC a.1.1.3 15647 1kk8B 139 2.68e+01 a.39.1.5 77430 1ht6A 405 2.73e+01 b.71.1.1 83629 c.1.8.1 83630 1lfwA 470 2.74e+01 c.56.5.4 77942 d.58.19.1 77943 1s1dA 331 2.75e+01 unknown_sccs -4566 1q1hA 110 2.81e+01 unknown_sccs -262 1n9bA 265 2.85e+01 e.3.1.1 85463 6paxA 133 2.87e+01 6paxA a.4.1.5 64758 a.4.1.5 64759 1jkvA 266 2.97e+01 unknown_sccs 71719 1b8dA 164 2.98e+01 1cpcA a.1.1.3 15665 1bia 321 3.03e+01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1ehyA 294 3.09e+01 1ehyA c.69.1.11 34693 1o9iA 266 3.14e+01 unknown_sccs -698 1ny6A 267 3.14e+01 c.37.1.20 -7221 1k07A 263 3.20e+01 d.157.1.1 77218 1p0hA 318 3.24e+01 d.108.1.1 -10802 1mngA 203 3.25e+01 1avmA a.2.11.1 15776 d.44.1.1 38701 1h8mA 140 3.29e+01 1h8mA d.110.4.1 60782 1p9oA 313 3.30e+01 unknown_sccs -8423 1fp2A 352 3.32e+01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1exmA 405 3.35e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1cpcA 162 3.36e+01 1cpcA a.1.1.3 15643 1e2uA 553 3.42e+01 1e1dA e.26.1.1 43362 1r6fA 310 3.42e+01 unknown_sccs -11804 1e3oC 160 3.44e+01 1au7A a.4.1.1 59197 a.35.1.1 59198 1lw9A 164 3.53e+01 d.2.1.3 84727 1ofdA 1520 3.55e+01 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 1ns5A 155 3.59e+01 c.116.1.3 80705 1a6o 332 3.60e+01 1a6o 1ha3A 405 3.68e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1vybA 238 3.69e+01 1mgtA 174 3.79e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1k1vA 41 3.84e+01 a.37.1.1 71999 1qc5A 192 3.87e+01 1aoxA c.62.1.1 34147 1ukz 203 3.89e+01 1zin c.37.1.1 31840 1ermA 263 3.93e+01 1btl e.3.1.1 42690 1btl 263 3.94e+01 1btl e.3.1.1 42691 2fhi 147 3.98e+01 1fit d.13.1.1 37505 1gntA 553 3.99e+01 e.26.1.1 70290