# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1bxeA	113	2.40e+00	1bxeA	d.55.1.1	38898
1oo0A	147	3.44e+00		d.232.1.1	87182
1n3kA	130	3.60e+00		a.77.1.4	79965
1i4jA	110	3.83e+00		d.55.1.1	76734
1on2A	142	4.35e+00		a.4.5.24	87103
				a.76.1.1	87104
1j34B	123	4.94e+00		d.169.1.1	84049
1gqpA	221	8.31e+00		b.18.1.9	70372
1v61A	132	8.36e+00			
1qkmA	255	9.85e+00	3erdA	a.123.1.1	19309
1qhdA	398	1.09e+01	1qhdA	a.115.1.2	63324
				b.19.1.1	63325
1jkgA	140	1.45e+01		d.17.4.2	66795
1jenA	267	2.05e+01	1jenA		
1k0mA	241	2.07e+01		a.45.1.1	67949
				c.47.1.5	67950
1gpjA	404	2.25e+01		a.151.1.1	65451
				c.2.1.7	65452
				d.58.39.1	65453
1p2xA	159	2.29e+01			
1go3E	187	2.33e+01		b.40.4.5	83054
				d.230.1.1	83055
1obpA	159	2.39e+01	1obpA	b.60.1.1	27092
1h03P	125	2.63e+01		g.18.1.1	83411
				g.18.1.1	83412
1exqA	154	2.72e+01	1b9dA	c.55.3.2	33646
1nbwA	607	2.82e+01		c.8.6.1	80393
				c.55.1.6	80394
				c.55.1.6	80395
1p0hA	318	2.82e+01		d.108.1.1	-10802
1k4iA	233	2.89e+01		d.115.1.2	72056
1ab4	477	2.91e+01	1ab4	e.11.1.1	43251
1p5sA	203	2.95e+01		a.40.1.1	-900
1zin	217	3.03e+01	1zin	c.37.1.1	31915
				g.41.2.1	45178
1hn0A	1021	3.46e+01		a.102.3.2	83616
				b.18.1.17	83617
				b.24.1.1	83618
				b.30.5.2	83619
1m22A	503	3.51e+01		c.117.1.1	78464
1oh0A	131	3.60e+01		d.17.4.3	87004
1n3lA	372	3.74e+01		c.26.1.1	79966
1f5mA	180	3.78e+01	1f5mB	d.110.2.1	40895
1jvr	137	3.81e+01	1jvr	a.61.1.2	18132