;  SAM: prettyalign v3.5 (May 1, 2004) compiled 05/13/04_16:24:56
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                      
                                                                      
T0197 ................................................................
1d8hA hmyrnvpiwaqkwkptikalqsinvkdlkidpsflniipdddltksvqdwvyatiysiapelrs


                                                                      
                                                                      
T0197 ................................................................
1d8hA fielemkfgviidakgpdrvnppvssqcvfteldahltpnidaslfkelskyirgisevtentg


                                                             10       
                                                              |       
T0197 ...............................................AHHHHHHGSEVEIKFKI
1d8hA kfsiiesqtrdsvyrvglstqrprflrmstdiktgrvgqfiekrhva-----------------


       20        30        40        50        60        70        80 
        |         |         |         |         |         |         | 
T0197 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKLLRIRGVHNLKKYYLTFKEILDENNEEFYEV
1d8hA ---------------------------------------------QLLLYSPKDSYDVKISLNL


             90       100       110       120       130       140     
              |         |         |         |         |         |     
T0197 EFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSPEEAK
1d8hA ELPVPDNDPPEKYKSQ---SPISERTKDRVSYIHNDSCTRIDITK-------------------


        150       160       170                                       
          |         |         |                                       
T0197 EKIWEVAKMLGLKEEDVEPRLYLELINELSGRSS..............................
1d8hA ----------------------------------venhnqnsksrqsettheveleintpalln


                                                   
                                                   
T0197 .............................................
1d8hA afdnitndskeyaslirtflnngtiirrklsslsyeifegskkvm