Best Alignments for miniAGRP

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1hykA/miniAGRP-1hykA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1hykA/miniAGRP-1hykA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 2.0274e-104.10e-22 1hykA g.3.5.1
1y7jA/1y7jA-miniAGRP-t04-global-adpstyle1.a2m 1y7jA/1y7jA-miniAGRP-t04-global-adpstyle1.al 1.0730e-069.75e-17
1i26A/miniAGRP-1i26A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1i26A/miniAGRP-1i26A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 5.2396e-029.39e-04 g.3.6.3
1c4eA/1c4eA-miniAGRP-fssp-global-adpstyle5.a2m 1c4eA/1c4eA-miniAGRP-fssp-global-adpstyle5.al 1.6883e-011.49e-08 1c4eA g.3.4.1
1xi7A/miniAGRP-1xi7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xi7A/miniAGRP-1xi7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4116e+007.83e-02
1v5aA/miniAGRP-1v5aA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1v5aA/miniAGRP-1v5aA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 2.4168e+007.38e-01
1y29A/miniAGRP-1y29A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1y29A/miniAGRP-1y29A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 3.2495e+009.92e-01
1clvI/miniAGRP-1clvI-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1clvI/miniAGRP-1clvI-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 6.0914e+004.52e-03 1qfdA g.3.2.1
1fg9C/miniAGRP-1fg9C-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1fg9C/miniAGRP-1fg9C-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 7.1668e+002.30e+00 1jrhI b.1.2.1
b.1.2.1
1iva/miniAGRP-1iva-t2k-local-adpstyle1.a2m 1iva/miniAGRP-1iva-t2k-local-adpstyle1.al 1.2038e+012.85e+01 1agg g.3.6.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001