Best Alignments for miniAGRP

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1hykA/1hykA-miniAGRP-t2k-global-adpstyle1.a2m 1hykA/1hykA-miniAGRP-t2k-global-adpstyle1.al 9.5738e-093.34e-19 1hykA g.3.5.1
1y7jA/1y7jA-miniAGRP-t2k-global-adpstyle1.a2m 1y7jA/1y7jA-miniAGRP-t2k-global-adpstyle1.al 5.1574e-075.96e-16
1c4eA/miniAGRP-1c4eA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1c4eA/miniAGRP-1c4eA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 2.7412e-012.01e-02 1c4eA g.3.4.1
1i26A/miniAGRP-1i26A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1i26A/miniAGRP-1i26A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 3.3152e-019.39e-04 g.3.6.3
1v5aA/miniAGRP-1v5aA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1v5aA/miniAGRP-1v5aA-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 5.1411e+007.38e-01
1xi7A/miniAGRP-1xi7A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1xi7A/miniAGRP-1xi7A-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 6.5715e+004.78e-01
1htxA/miniAGRP-1htxA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1htxA/miniAGRP-1htxA-t2k-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 6.8974e+005.33e-04 1qfdA g.3.2.1
1fg9C/miniAGRP-1fg9C-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1fg9C/miniAGRP-1fg9C-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 7.8496e+004.28e+00 1jrhI b.1.2.1
b.1.2.1
1y29A/miniAGRP-1y29A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1y29A/miniAGRP-1y29A-t2k-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 8.1394e+003.26e+00
1hy9A/miniAGRP-1hy9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hy9A/miniAGRP-1hy9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7941e+006.80e-01 1hy9A g.3.17.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001