Best Alignments for miniAGRP

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1hykA/miniAGRP-1hykA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1hykA/miniAGRP-1hykA-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 1.2285e-114.10e-22 1hykA g.3.5.1
1y7jA/1y7jA-miniAGRP-t04-global-adpstyle1.a2m 1y7jA/1y7jA-miniAGRP-t04-global-adpstyle1.al 1.8280e-069.75e-17
1i26A/miniAGRP-1i26A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1i26A/miniAGRP-1i26A-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 1.3696e-021.18e-03 g.3.6.3
1c4eA/miniAGRP-1c4eA-t04-global-adpstyle1.a2m 1c4eA/miniAGRP-1c4eA-t04-global-adpstyle1.al 1.1868e-011.57e-02 1c4eA g.3.4.1
1xi7A/miniAGRP-1xi7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xi7A/miniAGRP-1xi7A-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6125e-017.83e-02
1v5aA/miniAGRP-1v5aA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1v5aA/miniAGRP-1v5aA-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 1.3958e+001.25e+00
1y29A/miniAGRP-1y29A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1y29A/miniAGRP-1y29A-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 1.6665e+009.92e-01
1fg9C/miniAGRP-1fg9C-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1fg9C/miniAGRP-1fg9C-t04-local-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 2.1300e+002.30e+00 1jrhI b.1.2.1
b.1.2.1
1clvI/miniAGRP-1clvI-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.a2m 1clvI/miniAGRP-1clvI-t04-global-str2+CB_burial_14_7-1.0+0.4+0.4-adpstyle5.al 4.6508e+004.52e-03 1qfdA g.3.2.1
1tocR/miniAGRP-1tocR-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tocR/miniAGRP-1tocR-t04-global-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6253e+001.08e+00 1tocR g.8.1.2
g.8.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001