Endonuclease UVDE from S. pombe

(Last Update: 04/20/00 )

The UVDE endonuclease from S. pombe is used as the master sequence for the alignments on this page. See Masashi Takao, Rie Yonemasu, Kazuo Yanamoto, Akira Yasui
Characterization of a UV endonuclease gene from the fission yeast Schizosaccharomyces pombe and its bacterial homolog
Nucleic Acids Research 24(7): 1267-1271, 1996.

Domains and features (from SwissProt)

(not in Swissprot yet)

Protein sequences (names from NCBI's non-redundant data base):

See the alignment, as all sequences in the alignment are close homologs.

Structures in PDB:

None found in blast search.

Multiple alignment (using SAM-T99 method)

pretty-printed (human-readable)
gzipped A2M format (machine-readable)

Predicted secondary structure

CASP format
FASTA format
RDB format

Potential bacterial matches

(Note: need to make sequence links below hot.)

Organism Score file Most likely homolog E-value Alignment
Deinococcus radiodurans drad.dist gi|6459593|gb|AAF11370.1|AE002022_3 UV damage endonuclease, putative 8.8e-119
Mycoplasma genitalium geni.dist no likely homologs

Potential Archea matches

Organism Score file Most likely homolog E-value Alignment
Aeropyrum pernix aero.dist
no likely homologs
Archaeoglobus fulgidus aful.dist
no likely homologs
Methanobacterium thermoautotrophicum thermo.dist
no likely homologs
Methanococcus jannaschii jann.dist gi|1498901|gb|AAB98114.1| hypothetical protein 9.5e-08
Pyrococcus abyssi pabyssi.dist
no likely homologs
Pyrococcus horikoshii pyrohori.dist
no likely homologs

Predicted alignments to PDB files

Not available yet.

Predicted tertiary structure.

Not available yet.

What other information should be included in this?

This is a draft page with information about DNA-repair proteins. There is a lot more work to be done on these pages.
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The Bioinformatics group at UCSC is supported in part by NSF grant BIR-9408579, NSF grant MIP-9488395, DOE grant DE-FG03-95ER62112, LACOR grant 4158U0015-3A-01, and by GANN and NSF graduate fellowships.

The DNA-repair pages are not currently funded, so development of them is very slow.

Questions about page content should be directed to

Kevin Karplus
Computer Engineering
University of California, Santa Cruz
Santa Cruz, CA 95064
USA
karplus@soe.ucsc.edu
(831) 459-4250