PFRMAT SS
TARGET gi|119330|sp|P04418|END5_BPT4
AUTHOR xxx
METHOD Using neural net overrep-2260-IDaa13-5-9-7-10-5-9-11-ehl-seeded2-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	    9
METHOD	    7	   10
METHOD	    5	    9
METHOD	   11	    3 (1 EHL )
METHOD The input amino acid frequencies were determined from
METHOD alignment end5_bpt4.t99.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 3.31068
METHOD
MODEL 1
M C 0.86
T C 0.63
R E 0.48
I C 0.48
N C 0.51
L C 0.44
T E 0.40
L C 0.46
V H 0.83
S H 0.86
E H 0.91
L H 0.91
A H 0.94
D H 0.92
Q H 0.81
H H 0.58
L H 0.61
M H 0.75
A H 0.83
E H 0.83
Y H 0.81
R H 0.69
E H 0.52
L C 0.69
P C 0.52
R H 0.63
V H 0.89
F H 0.95
G H 0.97
A H 0.98
V H 0.97
R H 0.97
K H 0.90
H H 0.82
V H 0.71
A C 0.53
N C 0.76
G C 0.89
K C 0.87
R C 0.68
V E 0.64
R E 0.74
D E 0.72
F E 0.68
K E 0.60
I C 0.54
S C 0.75
P C 0.74
T E 0.60
F E 0.89
I E 0.91
L E 0.72
G C 0.72
A C 0.82
G C 0.72
H E 0.59
V E 0.81
T E 0.88
F E 0.88
F E 0.75
Y E 0.52
D C 0.62
K C 0.69
L C 0.58
E H 0.44
F H 0.55
L H 0.67
R H 0.75
K H 0.87
R H 0.91
Q H 0.94
I H 0.97
E H 0.98
L H 0.98
I H 0.98
A H 0.98
E H 0.98
C H 0.95
L H 0.91
K H 0.73
R C 0.71
G C 0.90
F C 0.78
N C 0.57
I E 0.51
K C 0.61
D C 0.64
T C 0.71
T C 0.70
V C 0.71
Q C 0.81
D C 0.93
I H 0.52
S H 0.50
D H 0.53
I H 0.53
P H 0.56
Q H 0.82
E H 0.73
F H 0.66
R H 0.58
G C 0.57
D C 0.75
Y C 0.80
I C 0.89
P C 0.81
H C 0.70
E H 0.80
A H 0.86
S H 0.92
I H 0.94
A H 0.95
I H 0.97
S H 0.96
Q H 0.96
A H 0.95
R H 0.92
L H 0.92
D H 0.90
E H 0.90
K H 0.85
I H 0.77
A H 0.56
Q C 0.69
R C 0.92
P C 0.73
T C 0.64
W H 0.48
Y H 0.40
K H 0.41
Y H 0.39
Y C 0.40
G C 0.45
K C 0.50
A C 0.49
I C 0.61
Y C 0.80
A C 0.93
END