Electronic Supplement


Ultraconserved Elements in the Human Genome.

Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D.
Science, 304(5675), pp. 1321-1325 (2004).  free reprint  pubmed

Paper Abstract

There are 481 segments longer than 200 base pairs (bp) that are absolutely conserved (100% identity with no insertions or deletions) between orthologous regions of the human, rat, and mouse genomes. Nearly all of these segments are also conserved in the chicken and dog genomes, with an average of 95 and 99% identity, respectively. Many are also significantly conserved in fish. These ultraconserved elements of the human genome are most often located either overlapping exons in genes involved in RNA processing or in introns or nearby genes involved in the regulation of transcription and development. Along with more than 5000 sequences of over 100 bp that are absolutely conserved among the three sequenced mammals, these represent a class of genetic elements whose functions and evolutionary origins are yet to be determined, but which are more highly conserved between these species than are proteins and appear to be essential for the ontogeny of mammals and other vertebrates.

Figure 1

Chromosomal distribution of intervals:
chr1 ps pdf chr2 ps pdf chr3 ps pdf chr4 ps pdf chr5 ps pdf chr6 ps pdf chr7 ps pdf chr8 ps pdf
chr9 ps pdf chr10 ps pdf chr11 ps pdf chr12 ps pdf chr13 ps pdf chr14 ps pdf chr15 ps pdf chr16 ps pdf
chr17 ps pdf chr18 ps pdf chr19 ps pdf chr20 ps pdf chr21 ps pdf chr22 ps pdf chrX ps pdf chrY ps pdf
Note that you will probably need to scroll down when the figure first shows.
See Figure 1 and text for further details.

Raw Sequences

Download the Watson strand DNA of all the ultra conserved elements.

Build 35 (hg17) Custom Track

Click here to add a custom track of ultraconserved elements to the UCSC genome browser display of Human Build 35 (hg17).

Supplementary Table 1

In column type 'e' is exonic, 'n' is non-exonic and 'p' is possibly exonic.
Background colors for 'e' and 'n' mimic those of the tick marks of Figure 1.
In right half of table, columns contain the number of element bases overlapping the respective feature.
Build 34 (hg16) coords are of the element itself, yet the link will open a display three times its length, to show genomic context.
Consult text for full legend.

ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.1p207chr1:10307243-1030744965151DFFAPEX14AK1309969928600066002070000.098820719600
uc.2n207chr1:10442089-1044229534690AK130996FLJ20321FLJ371182737830000002070000.870718918900
uc.3p225chr1:10460711-1046093553312AK130996FLJ20321FLJ37118255143000222002250000.181822521200
uc.4n359chr1:10467795-104681534286FLJ20321\NFLJ371182479250000000359000.4531359347359287
uc.5n214chr1:10490897-1049111027388FLJ20321\NFLJ371182249680000000002140.0574213212200179
uc.6p301chr1:10504667-1050496741158FLJ20321\NFLJ37118211111000301000003010.2363301288279237
uc.7p256chr1:10545679-1054593482170FLJ20321\NFLJ37118170144000235000002560.266325624700
uc.8n216chr1:10561364-1056157997855FLJ20321\NFLJ371181544990000000002160.2285207202207172
uc.9n202chr1:10634956-10635157171447FLJ20321\NFLJ37118809210000000002020.022220219500
uc.10n275chr1:10675120-10675394211611FLJ20321\NFLJ37118406840000000002750.0177275273275250
uc.12p201chr1:35077889-3507808968766FLJ23151SFPQZNF262140539000201002010000.6008201189201110
uc.13e237chr1:35786852-3578708836769EIF2C4EIF2C1EIF2C33689213713719719901371000000.1805201162160134
uc.14p213chr1:37908298-379085105531CGI-94\NPOU3F11506100010000021300.397121318500
uc.15n233chr1:37974370-3797460248625POU3F1\NRRAGC7425650000000002330.4661233229197183
uc.16p211chr1:38041493-38041703115748POU3F1\NRRAGC67546400024000002110.092921118000
uc.17n237chr1:38215445-38215681289700POU3F1\NRRAGC5014860000000002370.354323717100
uc.18n238chr1:44128955-4412919229316DMAP1PRNPIPFLJ105973821140000002380000.21422420900
uc.19n256chr1:44403606-44403861169431PRNPIP\NFLJ105971074450000000002560.857425624400
uc.20p269chr1:44415666-44415934181491PRNPIP\NFLJ105979537200025000002690.743526923900
uc.21n235chr1:48482903-48483137175140SPATA6FLJ14442FLJ11588803210000002350000.182823522300
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.22n308chr1:50376149-50376456119188DMRTA2FAF1LOC513364136910000003080000.1317308300284179
uc.23n229chr1:50405695-50405923148734DMRTA2FAF1LOC513363842240000002290000.025229226152112
uc.24n336chr1:50469063-50469398212102DMRTA2FAF1LOC513363207490000003360000.244133633100
uc.25n235chr1:50535952-50536186278991DMRTA2FAF1LOC513362539610000002350000.1622352337754
uc.26n212chr1:62739563-6273977438822AUTL1\NFOXD34192680000000002120.2032212212212191
uc.27n290chr1:62739797-6274008639056AUTL1\NFOXD34189560000000002900.0501290290290273
uc.28e355chr1:70066629-7006698325453FLJ20331SFRS11DKFZP566D13462985235518135535535503550000.0883355340167132
uc.29n219chr1:87244976-8724519411120LMO4\NAF11808913719520000000002190.0045219219219209
uc.30n243chr1:87451593-87451835217737LMO4\NAF11808911653110000000002430.246824323900
uc.31n253chr1:88395168-883954201161312LMO4\NAF1180892217260000000002530.011816816510392
uc.33e312chr1:96743538-967438499890BC030757PTBP2DPYD2712533436342690343120000.3978252251201124
uc.34e208chr1:96751973-9675218018325BC030757PTBP2DPYD26292217602082081760003200.01642082046231
uc.35p205chr1:97465205-97465409713056PTBP2DPYDAK092728506426000165002050000.271220518600
uc.36p264chr1:108587040-10858730336279FLJ30525FLJ10330FLJ358382429600158264002640000.142326425800
uc.37e202chr1:114578780-11457898141876AMPD1D1S155EFLJ2116835142931022022020932020000.90191421297448
uc.38n224chr1:161127332-161127555614407CDCA1\NPBX15888810000000002240.020222419500
uc.39n356chr1:161210912-161211267697987CDCA1\NPBX15051690000000003560.3389356338262208
uc.40p247chr1:161825339-1618255851312414CDCA1PBX1LMX1A534716000134002470000.025214113200
uc.41n216chr1:210655265-210655480151959RPS6KC1\NPROX15623030000000002160.0124216212194137
uc.42n266chr1:212945530-21294579593884AF155110\NUSH2A4579960000000002660.0594266265197167
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.43n257chr1:240842759-240843015232641SDCCAG8AKT3ZNF2383202900000002570000.123625725100
uc.44e230chr1:241164431-241164660211234AKT3ZNF238AK1246149695230191230230023000000.0586230218230144
uc.45e203chr1:241963410-2419636129728LOC116228HNRPUAK0959451157722030203203198005500.129820318600
uc.46e217chr1:241964327-24196454310645LOC116228HNRPUAK09594511484120320320321714954140000.6011210204217128
uc.47n227chr2:7796390-7796616590426RNF144\NAK1259052126060000000002270.0531227226167123
uc.48e298chr2:20462845-2046314253461SDC1PUM2ARHB16859623723724425802372980000.3291292285292181
uc.49e207chr2:33787944-3378815023748RASGRP3AK074867AK0574701377072071782071810178290000.8197207179207144
uc.50e222chr2:38950836-3895105714775GALMSFRS7GEMIN628836222222222222160282220000.406322221200
uc.51n207chr2:57947093-579472991359250AB067499\NVRK23010600000000002070.268920720700
uc.52n274chr2:59082720-59082993639695FANCL\NBCL11A15698420000000002740.087127427000
uc.53n232chr2:59107845-59108076664820FANCL\NBCL11A15447590000000002320.115123222500
uc.54n209chr2:59173937-59174145730912FANCL\NBCL11A14786900000000002090.01420920600
uc.55n240chr2:59721112-597213511278087FANCL\NBCL11A9314840000000002400.118624022700
uc.56n202chr2:59922365-599225661479340FANCL\NBCL11A7302690000000002020.273320220100
uc.57n246chr2:60113774-601140191670749FANCL\NBCL11A5388160000000002460.029400184138
uc.58n203chr2:60272497-602726991829472FANCL\NBCL11A3801360000000002030.4592203203203184
uc.59n220chr2:60272917-602731361829892FANCL\NBCL11A3796990000000002200.4273220211178104
uc.60n217chr2:60416094-604163101973069FANCL\NBCL11A2365250000000002170.0137137119133118
uc.61e326chr2:60662107-606624322219082FANCLBCL11APAPOLG2957063268232632603263260000.0181326304326250
uc.62e234chr2:60755216-607554492312191FANCLBCL11APAPOLG202689875872228700147000.05083726222152
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.63e278chr2:61727035-6172731254511USP34XPO1AK0233673104131520152276002780000.019527826611769
uc.64p245chr2:63168625-63168869460614TMEM17NACSINOTX18365700245245002450000.2002245244210136
uc.65n212chr2:66273125-66273336639280SPRED2\NMEIS13637290000000002120.078321220100
uc.66n247chr2:73149541-7314978713526EMX1SFXN5GAF11252590000002470000.070724722900
uc.67n217chr2:104358126-1043583421302855FLJ30294\NPOU3F37350260000000002170.122521721511989
uc.68n255chr2:144125491-144125745114847KYNUARHGAP15AK1267747821310000002550000.4332255255221169
uc.69n301chr2:144322879-144323179312235KYNUARHGAP15AK1267745846970000003010000.127714514500
uc.70p237chr2:144648108-144648344637464KYNUARHGAP15AK126774259532000237002370000.0567237234237181
uc.71n248chr2:144923625-14492387212536AK126774BC017741ZFHX1B4324810000002480000.283824824212983
uc.72n407chr2:144925741-14492614714652AK126774BC017741ZFHX1B4302060000004070000.1375407407407350
uc.73p201chr2:144973082-14497328261993AK126774BC017741ZFHX1B383071000181002010000.2973178175177124
uc.74p538chr2:145036732-145037269125643AK126774BC017741ZFHX1B319084005370005380000.1131538537217194
uc.75e236chr2:145356619-14535685455811BC017741ZFHX1BAK098835725932360236236236000000.319228228224194
uc.76n335chr2:145371902-14537223671094BC017741ZFHX1BAK098835572110007003350000.5486335330216172
uc.77e296chr2:145396534-14539682995726BC017741ZFHX1BAK09883532618296029629629602960000.4681296294262226
uc.78n248chr2:145399123-14539937098315BC017741ZFHX1BAK098835300770000002480000.448624823611083
uc.79p295chr2:145407946-145408240107138BC017741ZFHX1BAK0988352120700021002950000.342929529300
uc.80n294chr2:145411621-145411914110813BC017741ZFHX1BAK098835175330000002940000.015129429100
uc.81n211chr2:147344834-1473450441856184ZFHX1B\NACVR214679090000000002110.0947211209211159
uc.82n210chr2:156929644-15692985378091AK096400\NNR4A24536420000000002100.192210208177122
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.83n296chr2:157194172-157194467342619AK096400\NNR4A21890280000000002960.0062296295296275
uc.84p209chr2:157397251-1573974595522NR4A2\NGPD2973072090209202000209000.099120919900
uc.85n248chr2:157753959-157754206111497GPD2\NGALNT55626780000000002480.1195248247248230
uc.86n340chr2:157862655-157862994220193GPD2\NGALNT54538900000000003400.434934033800
uc.87n290chr2:158102814-158103103460352GPD2\NGALNT52137810000000002900.6705290281276174
uc.88n312chr2:162297586-1622978972359TANK\NPSMD14697000000000031200.0095272260272219
uc.89p307chr2:162441217-162441523145990TANKPSMD14TBR133918000295003070000.130430730300
uc.90e206chr2:162475571-1624757764800PSMD14TBR1AK09551117152206206206206020600000.1748206199206168
uc.91n207chr2:163247566-16324777236264GCGFAPMDA5783610070002070000.5494002514
uc.92n309chr2:164653223-164653531755438KCNH7\NFIGN131370000000003090.0809309308309269
uc.93n263chr2:164864451-164864713193762FIGN\NGRB146871630000000002630.0007263262249194
uc.94n200chr2:165046714-165046913376025FIGN\NGRB145049630000000002000.0207200199194142
uc.95p251chr2:171774074-171774324452AK123485\NGAD110129100244251000251000.1473251243251235
uc.96p261chr2:173023218-17302347869928SLC25A12HAT1DLX1129306000145002610000.053926125000
uc.97e442chr2:173025175-17302561671885SLC25A12HAT1DLX112716844211244211601053370000.2843442432442331
uc.98n238chr2:173159062-1731592992118DLX1\NDLX277050000000023800.1343238236237179
uc.99n398chr2:173160925-1731613223981DLX1\NDLX256820000000039800.065398395398348
uc.100n207chr2:174317324-174317530197164RAPGEF4ZAKCDCA71045930000002070000.02822072079283
uc.101e254chr2:174977025-174977278204375M19503SP3AK095037775992542542542541886600000.3511254246233142
uc.102e338chr2:175148953-17514929091488AK095037PTD004AK1282152524199597952260952430000.1274338332335249
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.103p233chr2:175172216-175172448114751AK095037PTD004AK128215229261000233002330000.1949233220196166
uc.104n216chr2:175189478-175189693132013AK095037PTD004AK1282152120160000002160000.2721216210216132
uc.105n223chr2:175192331-175192553134866AK095037PTD004AK1282152091560000002230000.0371223221167122
uc.106p206chr2:175227967-175228172170502AK095037PTD004AK12821517353700037002060000.721620619900
uc.107n237chr2:175410152-1754103885313AK128215\NCIR5035000000023723700.029915414200
uc.108n374chr2:177142901-17714327473365KIAA1715\NHOXD13168010000000003740.1367314310374355
uc.109n224chr2:177705882-177706105678BC013438\NhnRNPA35739660000000224000.266422422200
uc.110n243chr2:237358132-23735837437490CENTG2\NGBX228430000000024300.32662432283218
uc.111p296chr3:9446461-944675632708AK128398\NAB0515443920225225246296000296000.00180000
uc.483p402chr3:17567733-17568134351576AK125129TBC1D5SATB179710900041004020000.0344402400402334
uc.112n346chr3:18144568-18144913387164TBC1D5\NSATB12203300000000003460.1555338337338299
uc.113p247chr3:18651408-18651654196199SATB1\NKCNH851336600022000002470.078224721500
uc.114n294chr3:18819454-18819747364245SATB1\NKCNH83452730000000002940.1157294280291195
uc.115n219chr3:19009162-19009380553953SATB1\NKCNH81556400000000002190.297721921500
uc.116n206chr3:70499494-70499699548937MITF\NAK125942961190000000002060.0018206200206152
uc.117n251chr3:70792683-70792933192800AK125942\NFOXP11362710000000002510.4338251245251218
uc.118n219chr3:70792935-70793153193052AK125942\NFOXP11360510000000002190.14662192177441
uc.119n301chr3:115754368-11575466840423AF116655ZNF288AF1198864052510000003010000.293730029200
uc.120p270chr3:115755940-11575620941995AF116655ZNF288AF119886403710000263002700000.006327026000
uc.121n293chr3:115896375-11589666797686ZNF288\NAF1198862632520000000002930.307729328800
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.122n215chr3:115932792-115933006134103ZNF288\NAF1198862269130000000002150.146621520300
uc.123n492chr3:138304453-138304944253619MGC34923\NSOX144995430000000004920.0814492482483432
uc.124n287chr3:138369353-138369639318519MGC34923\NSOX144348480009000002870.064287284266243
uc.125n265chr3:138389226-138389490338392MGC34923\NSOX144149970000000002650.0714265261243156
uc.126n271chr3:138446557-138446827395723MGC34923\NSOX143576600000000002710.027271271257237
uc.127n272chr3:148351617-148351888768212PLSCR1\NZIC4743530000000002720.4969272267272222
uc.128p299chr3:148370547-148370845787142PLSCR1\NZIC455396000201000002990.0517299295299238
uc.129e212chr3:153485296-153485507105607AY358260MBNL1P2RY13881375455551660542120000.6306212181212204
uc.130p224chr3:159097487-159097710457554BC029129\NSHOX237047000224000002240.0406224220224202
uc.131n207chr3:159310953-159311159156935AF257098MGC12197MLF12987360000002070000.2111207203207160
uc.132n208chr3:159347072-159347279193054AF257098MGC12197MLF12626160000002080000.0442208203208122
uc.133n277chr3:159347391-159347667193373AF257098MGC12197MLF12622280000002770000.2992277275221202
uc.134p211chr3:159566817-159567027412799AF257098MGC12197MLF14286800211211002110000.0323211203211193
uc.135e201chr3:170155196-1701553961021196GOLPH4EVI1ARPM165022920120120120102012010000.2597201198201137
uc.136p347chr3:170514865-17051521194639EVI1AK096400ARPM1290414000230003470000.343334734100
uc.137n385chr3:181757770-181758154101240TTC14AL122120FXR11932200000003850000.127838538200
uc.138e419chr3:186970209-186970627106483IMP-2SFRS10ETV511588793277345419004190000.4022419407347206
uc.139p338chr4:4587982-4588319102655D4S234ESTX18MSX1337647000224003380000.8228338315338213
uc.140n223chr4:12760753-127609751579350HS3ST1\NBC0350543592550000000002230.444122321000
uc.141e295chr4:24280045-24280339637461PPARGC1ADHX15SOD3267763295295295295295000000.09542952935933
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.142p259chr4:41665611-4166586948009AL831962PHOX2BFLJ1052518684100149155002590000.8389259258259240
uc.143e218chr4:77037519-7703773623552CDKL2G3BP2VDP704409999991150991190000.0032218194160117
uc.144e205chr4:83805060-8380526451837HNRPDHNRPDLMASA4893205205205205002050000.2309205202205141
uc.145n248chr4:105805133-105805380705339TACR3\NCXXC4467840000000002480.7572248245213192
uc.146n214chr4:112375296-112375509372221PITX2\NAK0964001062770000000002140.464321421214398
uc.147p308chr4:151814010-15181431757799MGC45428LRBAMAB21L226674500308308003080000.7168308305285219
uc.148p240chr4:152071579-152071818315368MGC45428LRBAMAB21L29244000240002400000.1198240239240164
uc.149p204chr4:152071820-152072023315609MGC45428LRBAMAB21L29039000204002040000.433320420197
uc.150n262chr5:3565359-3565620757106CEI\NAY335938832850000000002620.0111262259262213
uc.151e214chr5:32425638-3242585167061PIP3APZFRPC42053212141012142140991160000.0555214213204188
uc.152n201chr5:50351523-50351723197461FLJ21308\NISL13431190000000002010.0898201196201133
uc.153e240chr5:72279759-72279998392436ZNF366TNPO1BC014311559727681802400761640000.8628237235240219
uc.154p203chr5:72294088-722942905241TNPO1\NBC014311416802010201203000020300.3568203196195154
uc.155p207chr5:77018437-77018643146043FLJ10904\NAK12839552502159140159159000002070.3559386207138
uc.156p213chr5:77019492-77019704147098FLJ10904\NAK1283955144100095000002130.0653213212179120
uc.157n207chr5:77025234-77025440152840FLJ10904\NAK128395457050000000002070.0048132119178143
uc.158n224chr5:77224326-7722454968082AK128395\NAP3B11576730000000002240.3261224221208184
uc.159n472chr5:77232005-7723247675761AK128395\NAP3B11497460000000004720.45472451472359
uc.160n322chr5:77352917-77353238196673AK128395\NAP3B1289840080000003220.031332231200
uc.161p278chr5:77442602-77442879286358AK128395AP3B1SCAMP1297666000278002780000.1868278274278196
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.162p218chr5:81231434-81231651100440SSBP2\NAPG10L12026500159159000002180.02912810700
uc.163n376chr5:87252696-87253071459925CCNH\NMGC332143220260000000003760.26023763364134
uc.164n203chr5:87324478-87324680531707CCNH\NMGC332142504170000000002030.3847203178203120
uc.165n224chr5:87777006-87777229128267MGC33214\NMEF2C3230090000000002240.2169224207216162
uc.166p310chr5:88045878-88046187397139MGC33214\NMEF2C540513100310310000003100.005326825000
uc.167n201chr5:88263697-88263897573MEF2C\NCETN315097140000000201000.089419216600
uc.168n220chr5:91012866-91013085249671ARRDC3\NAK09640016136330000000002200.09922021600
uc.169e204chr5:92995090-9299529399030AK096400NR2F1AK126015148421762042042040176280000.5514204198204171
uc.170n310chr5:93301743-9330205228138AK022140DKFZP564D172AK1309412606910000003100000.0741310310310243
uc.171n208chr5:93649920-93650127128607DKFZP564D172AK130941AB0206321726360000002080000.1085208207208193
uc.172n218chr5:93724792-93725009203479DKFZP564D172AK130941AB020632977540000002180000.31552182122920
uc.173e276chr5:133802376-13380265123394CDKL3UBE2BMGC1301711369276276276276276000000.7571276255165100
uc.174e260chr5:138719870-13872012911460AF116688MATR3PAIP233637260260260260026000000.0114260240256123
uc.175n250chr5:158322733-15832298242959AF118062EBFAK1266781839050000002500000.0239250247250218
uc.176n246chr5:167313590-1673138353303273BC011998\NAB0329532124330000000002460.402124323600
uc.177n257chr5:170398551-170398807176607GABRPRANBP17TLX33184020000002570000.191925724200
uc.178n249chr5:170398920-170399168176976GABRPRANBP17TLX33180410000002490000.398924924500
uc.179n219chr5:170609134-170609352387190GABRPRANBP17TLX31078570000002190000.291721921600
uc.180n225chr5:170609411-170609635387467GABRPRANBP17TLX31075740000002250000.024222522400
uc.181n278chr5:170610401-170610678388457GABRPRANBP17TLX31065310000002780000.4127827300
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.182p239chr5:170684001-170684239462057GABRPRANBP17TLX332970000239002390000.100623921700
uc.183e236chr5:171365442-171365677500343FGF18FBXW1BSTK1085866102102236236002360000.326923621200
uc.184e230chr5:173366215-173366444341635LOC91272CPEB4BC034971306792300230230230000000.26313513413696
uc.185e411chr5:178157908-17815831826750COL23A1CLK4ZNF354A938784111354114110913200000.59411379396272
uc.186e305chr5:179155889-1791561939184RUFY1HNRPH1AK0930421977230514930530501391660000.2458305295171149
uc.187n212chr6:10502663-10502874182835OFCC1PAK1IP1TFAP2A32740000002120000.16721220800
uc.188e215chr6:16407363-164075773605GMPRSCA1RNPC69821752150215215215000000.171121321100
uc.189e573chr6:36614372-3661494452269STK38SFRS3CDKN1A78413573458573573005730001e-04573564553410
uc.190n200chr6:41570295-41570494204814AJ225109FOXP4BC009628450500000002000000.603200200163
uc.191n208chr6:51123630-51123837265118TFAP2B\NPKHD14031430000000002080.0802208204192127
uc.192n244chr6:51195833-51196076337321TFAP2B\NPKHD13309040000000002440.383724424200
uc.193e319chr6:86317282-8631760018082SNX14SYNCRIPHTR1E1325405319130319319319000000319315319233
uc.194e201chr6:93964662-939648622672287MAP3K7EPHA7MANEA21061481261081291260126750000.4665201198150125
uc.195p273chr6:97708954-9770922674725KIAA1900C6orf167POU3F21618969000272002730000.017827326900
uc.196n221chr6:98162138-98162358385487C6orf167\NPOU3F211658370000000002210.4213221219124106
uc.197n224chr6:98408397-98408620631746C6orf167\NPOU3F29195750000000002240.152922422311385
uc.198n307chr6:98765487-98765793988836C6orf167\NPOU3F25624020000000003070.002830728800
uc.199n256chr6:98859453-988597081082802C6orf167\NPOU3F24684870000000002560.18742562515436
uc.200n254chr6:99041131-990413841264480C6orf167\NPOU3F22868110000000002540.090425424300
uc.201n240chr6:100097582-10009782135460CCNC\NPRDM1324260000000240000.105823121000
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.202n230chr6:101019581-10101981062431SIM1HELIC1GRIK28724560000002300000.2081230224198125
uc.203e203chr6:163900992-163901194255180PACRGQKIC6orf118170125818718318720317017220000.1643191185192158
uc.204n202chr7:1010242-101044366105LOC90637\NFLJ234712020090000000002020.032620219600
uc.205n252chr7:20574105-205743563283SP8\NSP46376610000000252000.4879252243242192
uc.206n499chr7:20748081-20748579177259SP8\NSP44634380000000004990.164499496499410
uc.207n230chr7:21555809-21556038260158SP4DNAH11RAM21287950000002300000.441222621600
uc.208e218chr7:23303942-2330415930642BC026177TRA2AAB05275975980218142218002180000.494821821500
uc.209e250chr7:23304160-2330440930860BC026177TRA2AAB05275973480164164250002500000.3143250246188129
uc.210p257chr7:26439350-26439606118670D42038\NSCAP2935500047000025700.4429257252152102
uc.211n291chr7:26471744-26472034151064D42038SCAP2HOXA14031710006002910000.0472291287255191
uc.212p205chr7:26884210-268844146412HOXA1\NHOXA33676205020520500020520500.403205190199174
uc.213e201chr7:26925404-2692560412779HOXA4HOXA5HOXA6178314315620120148950585800.1436201146201172
uc.214n243chr7:31144670-3114491221889NEUROD6\NLOC2230751543370000000002430.0007243215161138
uc.215n262chr7:41933365-41933626449909INHBAGLI3C7orf257560270000002620000.0103262260262227
uc.216p312chr7:50102955-50103266225327ZPBP\NZNFN1A1817500094000312000.3542312310278192
uc.217p221chr7:54378405-5437862516432MGC33530\NSEC61G1830720175175221000002210.106922121700
uc.218p286chr7:69215092-692153773016962FLJ13195AUTS2AK096991792645000182002860000.0136286283273167
uc.219p210chr7:69392897-693931063194767FLJ13195AUTS2AK096991614916000109002100000.462221020600
uc.220n257chr7:96245647-96245903294712SHFM1\NDLX5155390000000002570.569257232257122
uc.221p349chr7:96253032-96253380302097SHFM1\NDLX58062014961182000034900.751834933500
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.222n201chr7:113611674-113611874498119PPP1R3AFOXP2HIC5048370000002010000.5102201201201169
uc.223n268chr7:113612688-113612955499133PPP1R3AFOXP2HIC5037560000002680000.134268268267234
uc.224n295chr7:113617522-113617816503967PPP1R3AFOXP2HIC4988950000002950000.005229529500
uc.225n201chr7:113627358-113627558513803PPP1R3AFOXP2HIC4891530000002010000.1716201199201140
uc.226n205chr7:113763821-113764025650266PPP1R3AFOXP2HIC3526860000002050000.013520520112776
uc.227n231chr7:113849819-113850049736264PPP1R3AFOXP2HIC2666620000002310000.0699231231231164
uc.228n265chr7:114671200-114671464213182AK096400\NTFEC4630430000000002650.1057265264265191
uc.229n296chr7:114689148-114689443231130AK096400\NTFEC4450640000000002960.192429629300
uc.230p238chr7:114873964-114874201415946AK096400\NTFEC2603062380238238000002380.296423823600
uc.231n224chr7:115136620-115136843678602AK096400TFECTES2682800000002240000.3641224223224143
uc.232p247chr7:121499109-121499355160337AASS\NCADPS2146001710192175000002470.08032301986238
uc.233e266chr7:150220055-15022032048225C7orf21CENTG3ASB10442050600266002660000.1703266243233203
uc.234p272chr7:156229240-1562295113267BC033117\NAK1302048570800027200017027200.4198272259272188
uc.235n227chr8:25797831-2579805728598EBF2DOCK5AK129682225910000002270000.029227224189131
uc.236n267chr8:37307753-37308019503640FKSG2\NFLJ142993025650000000002670.7672212207195138
uc.237p468chr8:53187862-53188329364104LOC115294ST18AY35821330833000091004680000.0459465462415293
uc.238p358chr8:53217077-53217434393319LOC115294ST18AY358213279225000112003580000.403358358358275
uc.239p300chr8:59992334-59992633370177NSMAFAB018351CA81159430000186003000000.323430029900
uc.240p206chr8:65542500-655427051367194FLJ31657\NBHLHB5360000206000206000.05820619200
uc.241n202chr8:65547091-655472922636BHLHB5\NCYP7B1113600000000020200.046614287165133
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.242n265chr8:66199258-66199522437993CYP7B1\NFLJ105113651490000000002650.0202265265265161
uc.243p216chr8:77740924-77741139143263AF130052ZFH4PXMP3203980002160002160000.164216216216183
uc.244n321chr8:105918932-105919252361220ST7\NZFPM23684770000000003210.0501321319289266
uc.245n339chr8:106290415-106290753732703ST7ZFPM2OXR19483020000003390000.0091339334311282
uc.246e284chr8:119079806-119080089570718THRAP6EXT1AK09677726672528402842842166800000.239875250173
uc.247p361chr9:959154-95951465DMRT1\NDMRT378720028000036136100.2836358356359313
uc.248n222chr9:964189-9644105100DMRT1\NDMRT32976000000022222200.06410011476
uc.249n260chr9:8085728-8085987295960AL137489\NPTPRD2212800000000002600.245126025000
uc.250n209chr9:13929910-13930118689552MPDZ\NNFIB1472540000000002090.252420918400
uc.251n213chr9:15864309-15864521363319PSIP1C9orf93AK0922475440440000002130000.2882213207135115
uc.252n231chr9:16700753-16700983183021MGC24103\NAK130915745920000000002310.186223122710689
uc.253n222chr9:17322212-17322433544778AK130915C9orf39SH3GL22466300000002220000.2229195185222177
uc.254n279chr9:23486725-234870031044252AK096011\NELAVL21931010000000002790.136527926200
uc.255e232chr9:23681768-236819991239295AK096011ELAVL2BC04691919849682320232232232000000.6065108104232192
uc.256e206chr9:23682234-236824391239761AK096011ELAVL2BC046919198452820613206206206000000.125420610400
uc.257n264chr9:37205204-37205467181100PAX5ZCCHC7GRHPR2072200000002640000.5796264257258196
uc.258p201chr9:37314424-37314624290320PAX5ZCCHC7GRHPR98063000147002010000.092220119400
uc.259p308chr9:75084998-75085305106875C9orf65\NVPS13A164174000308000003080.3629284274305246
uc.260n231chr9:76929543-76929773527416PSAT1\NTLE47148750000000002310.136323122700
uc.261n311chr9:77328693-77329003926566PSAT1\NTLE43156450000000003110.106431130600
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.262n255chr9:79184841-791850951386067TLE4\NTLE14706220000000002550.343425525000
uc.263e207chr9:82047403-8204760918382C9orf64HNRPKC9orf7652062072072072070441630000.9233207204207145
uc.264e267chr9:82047611-8204787718590C9orf64HNRPKC9orf764938222200222267002670000.7695266257225167
uc.265e217chr9:103498309-103498525427952ABCA1CDW92CSDUFD1917641921701921750170470000.1047217206195128
uc.266p243chr9:104758130-104758372555366AK130032\NAK0234472425021960196194000002430.191617917100
uc.267e203chr9:120429935-12043013726799RBM18MRRFPTGS1792196567651210651380000.017720317700
uc.268p251chr9:120982873-12098312316017PDCL\NMNAB46532440251251000025100.006323613900
uc.269n217chr9:121913982-121914198395333AK123000KIAA1608LHX22365080000002170000.041421719900
uc.270p278chr9:123680114-123680391176786AB040954MAPKAP1LOC51145202309000278002780000.0925278248278228
uc.271p211chr9:123680397-123680607177069AB040954MAPKAP1LOC51145202093000211002110000.2754211196211122
uc.272n213chr9:123808633-123808845305305AB040954MAPKAP1LOC51145738550000002130000.17221320500
uc.273p321chr9:123893643-1238939638766LOC51145PBX3C9orf28571209000321003210000.0273321318310194
uc.274p327chr9:123897916-12389824213039LOC51145PBX3C9orf2856693000327327003270000.046327323258217
uc.275n255chr9:123960161-12396041575284LOC51145PBX3C9orf285047570000002550001e-04139139139121
uc.276p432chr9:123981857-12398228896980LOC51145PBX3C9orf28482884000154004320000.0558263262221188
uc.277p276chr9:123983755-12398403098878LOC51145PBX3C9orf28481142000276002760000.0806276269276235
uc.278p237chr9:124022210-124022446137333LOC51145PBX3C9orf28442726000132002370000.0843237234237212
uc.279n336chr9:124048604-124048939163727LOC51145PBX3C9orf284162330000003360000.2665336327336256
uc.280e220chr9:124054051-124054270169174LOC51145PBX3C9orf284109022012022012020201190000.2057220204220166
uc.281p238chr9:130771570-13077180729884BARHL1DDX31GTF3C44996500023800238000023823200
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.282e207chr9:135399783-13539998930899AK128156GRIN1ANAPC22653963642072070632070000.4641207185207172
uc.283n277chr10:49949360-4994963669224AJ237663\NERCC6616750000000002770.0084277268277226
uc.284p209chr10:49951459-4995166771323AJ237663\NERCC65964400209178000002090.936120919900
uc.285e232chr10:69860594-6986082561752CXXC6CCAR1C10orf24713761931942322320193390000.1377232231231189
uc.286n252chr10:76483627-76483878143253FLJ23841\NAK125693161480000000002520.0827252244206144
uc.287p257chr10:76840546-76840802330881AK024492\NC10orf114631900068000002570.6437257243198131
uc.288n223chr10:77071786-77072008562121AK024492C10orf11KCNMA19164680000002230000.7516223220223205
uc.289n254chr10:77335142-77335395825477AK024492C10orf11KCNMA16530810000002540000.4105254253254195
uc.290e206chr10:77386885-77387090877220AK024492C10orf11KCNMA1601386060060002060000.19042062023733
uc.291p231chr10:77628227-776284571118562AK024492C10orf11KCNMA1360019000225002310000.0396231225158134
uc.292e217chr10:98380042-9838025814188AF338191MLR2C10orf122536921702172170217800000.0125217203171124
uc.293n243chr10:102037256-10203749862906HIF1AN\NPAX21325560000000002430.3971243230243206
uc.294n444chr10:102038204-10203864763854HIF1AN\NPAX21314070000000004440.513440431444382
uc.295n209chr10:102039687-10203989565337HIF1AN\NPAX21301590000000002090.024209201209180
uc.296n461chr10:102079693-102080153105343HIF1AN\NPAX2899010000000004610.0466461441461404
uc.297n364chr10:102083807-102084170109457HIF1AN\NPAX2858840000000003640.0439364328353273
uc.298n359chr10:102112245-102112603137895HIF1AN\NPAX2574510000000003590.5732359346359304
uc.299e210chr10:102174022-102174231199672HIF1ANPAX2C10orf61626812101422101510142680000.3314208180179148
uc.300n208chr10:102211705-102211912237355HIF1ANPAX2C10orf61250000000002080000.106420820200
uc.301p284chr10:102232378-102232661258028HIF1ANPAX2C10orf610425100039002840000.4999284272284222
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.302n341chr10:102643767-10264410781643TLX1\NLBX172130000000034100.4746341327203163
uc.303n272chr10:102717014-10271728563709LBX1\NBTRC612020000000002720.0679241913387
uc.304p272chr10:102747091-10274736293786LBX1\NBTRC31125000190000002720.263227224900
uc.305p305chr10:102876022-102876326222717LBX1BTRCAF09093162482003050003050000.4288305300248145
uc.306p224chr10:102876626-102876849223321LBX1BTRCAF09093161959002240002240000.07122421600
uc.307p232chr10:102908570-102908801255265LBX1BTRCAF09093130007000208002320000.790623222400
uc.308p277chr10:102910399-102910675257094LBX1BTRCAF09093128133000277002770000.4067277274223135
uc.309n268chr10:102931618-102931885278313LBX1BTRCAF09093169230000002680000.281426826700
uc.310n229chr10:114068810-114069038197550ZDHHC6VTI1ATCF7L23057590000002290000.0354229228224158
uc.311p219chr10:119738989-119739207215033CASC2C10orf84GPR10279023000219002190000.1149219218219196
uc.312p322chr10:119741124-119741445217168CASC2C10orf84GPR10276785000322003220000.0364322321322269
uc.313e231chr10:121004761-12100499138006RGS10TIAL1BAG370499185185231231002310000.6143136134136110
uc.314n202chr10:124392535-12439273634396ACADSB\NBUB3615260000000002020.1222202199202175
uc.315n235chr10:124392947-12439318134808ACADSB\NBUB3610810000000002350.1933235235235208
uc.316n240chr10:126479965-12648020456497CTBP2\NAK09785585830000000024000.0555238226237176
uc.317n218chr10:130920738-130920955136812BC022565MGMTAK0214321390910000002180000.123721821800
uc.318p321chr10:131165986-13116630655039AL713797\NBC0365272123666506570000003210.7496321320274208
uc.319n316chr11:8269004-826931914512LMO1\NSTK331085890000000003160.169316306316294
uc.320n335chr11:8282143-828247727651LMO1\NSTK33954310000000003350.2704335318304207
uc.321n204chr11:15588733-15588936520535CALCB\NSOX63686960000000002040.271120419200
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.322n223chr11:16280660-162808821212462CALCBSOX6AL1366021291660000002230000.0507223214186131
uc.323p200chr11:16439645-1643984427533AL136602SOX6SMAP28465800024002000000.485420019900
uc.324e225chr11:30521830-30522054198355FLJ38968C11orf8FLJ461542941791821821822090182430000.7768225211218170
uc.325n235chr11:31649953-31650187154474FLJ25059ELP4AK130563197570000002350000.263323521900
uc.326p315chr11:31749989-3175030378201AK130563ELP4PAX625487000315003150000.28731531400
uc.327n268chr11:31750593-3175086078805AK130563ELP4PAX6249300000002680000.004826826600
uc.328p231chr11:31789972-3179020220335ELP4PAX6RCN128679700231231002310000.3827231212231204
uc.329n307chr11:32162301-3216260770914RCN1\NWT12110250000000003070.9627024600
uc.330e207chr11:66169256-6616946220406CCSRBM14MGC1591212981711712072070171360000.679620715600
uc.331e218chr11:82921467-8292168425952FLJ37266DLG2HT007214426410210010221801022180000.0241218206199150
uc.332n337chr11:115770342-115770678857448IGSF4\NMGC131253858660000000003370.085633730700
uc.333e270chr11:124182299-12418256812460ESAMFLJ23342AY35868114223270270270270202682700000.1075270225237178
uc.334n222chr11:131405597-131405818335094AK127362HNTOPCML4167110000002220000.000622219200
uc.335n214chr12:16606681-16606894198071MGST1DAT1FLJ2265515181760000002140000.006221421200
uc.336n251chr12:24183273-241835231185342AK122798SOX5FLJ328944276410000002510000.7545251249251196
uc.337n218chr12:40035446-40035663285111CNTN1\NDKFZp434B04171539560000000002180.075621821000
uc.338e223chr12:52144756-5214497818067DKFZP564J157PCBP2MAP3K121556793108932230931300001e-0422318000
uc.339p252chr12:52357363-523576144664ATP5G2\NKIAA153633555000213000252000.0830000
uc.340n259chr12:52377099-5237735724400ATP5G2\NKIAA1536138120000000002590.07070000
uc.341e314chr12:52669185-5266949812716HOXC11HOXC10HOXC9106712792792812851278350000.778314281294213
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.342e227chr12:52696761-526969874370HOXC8HOXC4SMUG116306229291754860022122100.090822713200
uc.343e388chr12:52708708-5270909516317HOXC8HOXC4SMUG11509542652662673421111543880000.055300369246
uc.344e254chr12:52713153-5271340620762HOXC8HOXC4SMUG11466430220254254002540000.127700254150
uc.345e301chr12:52733867-5273416741476HOXC8HOXC4SMUG112588224023930030161941010000.0788205134301257
uc.346p202chr12:105478977-10547917872637RPC2\NRFX4320002648000202000.0573182158184136
uc.347n209chr13:69591989-695921971111396KLHL1\NDACH2179010000000002090.011209207201169
uc.348n240chr13:69861358-698615971380765KLHL1DACHFLJ2262412384790000002400000.060824023500
uc.349p203chr13:69919303-699195051438710KLHL1DACHFLJ22624118057100203203002030000.6093203202203159
uc.350n240chr13:70054101-700543401573508KLHL1DACHFLJ2262410457360000002400000.5884240237240194
uc.351n255chr13:70466901-70467155227569DACH\NFLJ226246329210000000002550.0165255250243185
uc.352n200chr13:70492166-70492365252834DACH\NFLJ226246077110000000002000.133419516300
uc.353n323chr13:70569554-70569876330222DACH\NFLJ226245302000000000003230.453432332117798
uc.354p235chr13:76774830-76775064427164EDNRB\NPOU4F1196168002350000002350.0033235227156122
uc.355n228chr13:93316883-93317110254578SOX21\NABCC4545280000000002280.0015228227227210
uc.356e251chr13:95706821-95707071368789GPR80MBNL2MBNL266521222512512012510000.8579251243251220
uc.357p242chr13:110664338-110664579969742MGC35169\NSOX1533400242128000242000.0027242237163110
uc.358n226chr14:24368162-24368387858929STXBP6\NNOVA15368300000000002260.538422621700
uc.359e324chr14:24905096-249054191395863STXBP6NOVA1FOXG1B231966920213532432420200012200.705232432000
uc.360e287chr14:24905510-249057961396277STXBP6NOVA1FOXG1B23192922870287287287000000.769428728200
uc.361p267chr14:27223174-272234402166352NOVA1\NFOXG1B1648000267000267000.400526725900
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.362p239chr14:27338791-2733902986376BX248251\NPRKCM69669600051000002390.017623923700
uc.363n265chr14:27851358-27851622598943BX248251\NPRKCM1841030000000002650.657126526300
uc.364n207chr14:28702798-28703004315859PRKCM\NKIAA13333153980000000002070.151320718400
uc.365n278chr14:28732401-28732678345462PRKCM\NKIAA13332857240000000002780.112527827300
uc.366e202chr14:29372746-2937294718447COCHSTRN3AP4S11119481341341892020134680000.025818917016294
uc.367p298chr14:31834502-31834799542195AKAP6NPAS3EGLN3548661000298002980000.01429829400
uc.368n228chr14:32058615-32058842766308AKAP6NPAS3EGLN33246180000002280000.064822821900
uc.369n213chr14:32112656-32112868820349AKAP6NPAS3EGLN32705920000002130000.104121321300
uc.370n393chr14:32192610-32193002900303AKAP6NPAS3EGLN31904580000003930000.106739339000
uc.371n296chr14:34010228-3401052313928INSM2BC042045AB0206911249500000002960000.05732962889650
uc.372n277chr14:34033074-3403335036774INSM2BC042045AB0206911021230000002770000.438826623800
uc.373n394chr14:34571846-34572239241933BRMS1L\NMBIP1855700000000003940.111739438900
uc.374p224chr14:35705952-3570617574047SLC25A21MIPOL1FOXA1343056000223002240000.802722421600
uc.375e300chr14:35767259-35767558135354SLC25A21MIPOL1FOXA1281673343434340342660000.086827627600
uc.376e290chr14:43555788-4355607722116KIAA0423PRPF39FKBP31906929029029029012587780000.490429027900
uc.377e217chr14:43569061-4356927735389KIAA0423PRPF39FKBP3586921721721721721702170000.1556217201217161
uc.378e251chr14:78317518-783177681107249BX248745NRXN3DIO233614825125025125125102510000.3072251250251221
uc.379n252chr14:95421409-9542166083427VRK1\NBX1614836674020000000002520.2111252251232174
uc.380n232chr14:95752635-95752866414653VRK1\NBX1614833361960000000002320.1127232232232176
uc.381n238chr14:95869331-95869568531349VRK1\NBX1614832194940000000002380.1083238231203136
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.382n200chr15:33634968-3363516780547MGC14798\NHH1149679830000000002000.0973200190200135
uc.383n269chr15:34535983-34536251981562MGC14798\NHH114668990000000002690.7561269267269194
uc.384p266chr15:34681449-346817141127028MGC14798HH114BC028192125643000257002660000.1123266265266219
uc.385p209chr15:34901726-3490193475009BC028192MEIS2MGC351181040948000209002090000.1342209209209171
uc.386n203chr15:35238065-35238267128504MEIS2\NMGC351187046150000000002030.0574203203203135
uc.387e238chr15:39748110-3974834710600BC038449AL713737MGA872813901391970139099000.077423818200
uc.388n298chr15:55141581-55141878395423BX641000TCF12FLJ149572428800000002980000.0222295265228151
uc.389n271chr15:65381203-65381473118400FLJ11506FLJ12476MAP2K51697080000002710000.0195271266269185
uc.390e205chr15:65593988-6559419284028FLJ12476MAP2K5AF1300862021541101411020411640000.5433204201200166
uc.391e311chr15:65756122-65756432139957AF130086MAP2K5PIAS13059572748271010272840000.4015311309275223
uc.392n256chr15:68107952-681082071877TLE3\NUACA5568830000000256000.189400254168
uc.393e275chr15:72630059-7263033323771ARID3BCLK3FLJ2112883832752752752750562190000.4249275234271168
uc.394n202chr15:94965868-94966069328628AK090480\NARRDC412676460000000002020.0851202195181146
uc.395e249chr16:24545554-24545802205275CACNG3RBBP6AK1271919349124910324910401022490000.473524218212268
uc.396n208chr16:48872692-48872899450610AB014515\NCBLN12178210000000002080.070420819900
uc.397p311chr16:49513876-49514186302538MGC33367OAZFLJ3810132298900030003110001e-04311304182138
uc.398p322chr16:49668919-49669240126112OAZ\NFLJ381011679350054158000003220.5078284242216167
uc.399n214chr16:50627024-5062723716462CYLD\NSALL13211240000000002140.2473214208201141
uc.400n206chr16:51450088-51450293486902SALL1\NTNRC98002210000000002060.1203206159206160
uc.401p250chr16:52273300-5227354914626TNRC9\NAK092208638124000250000002500.4969250250234201
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.402p245chr16:53432987-53433231117233FTSAB023222AB05153983461000136002450000.0303245237245184
uc.403p206chr16:54102457-541026623509IRX3\NIRX564105000206206000206000.1696206199206197
uc.404p235chr16:55001959-55002193254963IRX5\NIRX6134080000115000002350.1226235231235214
uc.405n210chr16:59350792-59351001432516AK057513\NCDH821116240000000002100.372121019200
uc.406e211chr16:69456552-69456762183762CYB5-MNFAT5NQO162734626262656202110000.0061206193211146
uc.407e326chr16:69457343-69457668184553CYB5-MNFAT5NQO161828326300326326032600000.6509326304325231
uc.408e252chr16:72597321-72597572614984PMFBP1ATBF1AK1296953392402521202522521823400000.2356246225252194
uc.409e244chr16:72869147-72869390886810PMFBP1ATBF1AK129695674222440244142244000000.0682147130181130
uc.410n219chr17:35207780-3520799846823FLJ22578\NLHX12826140000000002190.28821821200
uc.411n229chr17:35525169-3552539729124LHX1AATFACACA1120840000002290000.461229209196143
uc.412n268chr17:35532036-3553230335991LHX1AATFACACA1051780000002680000.02732682619065
uc.413e272chr17:37941482-379417538642MGC15482PPARBPCRK75122327227227227202722720000.2075272234272171
uc.414e246chr17:38624137-3862438239047THRAP4THRACASC347207246246246246162842160000.01230015684
uc.415n207chr17:47138544-471387508162HOXB4\NHOXB54507000000020720700.37610000
uc.416e286chr17:47145525-4714581015143HOXB4HOXB5HOXB6199428621628628612815800000.0959286254286243
uc.417e222chr17:47156950-471571716230HOXB6BC010732HOXB7206323232323002220000.0409222183222165
uc.418e217chr17:56556866-5655708210016AK126318SFRS1Dlc278354217176217217217000000.0709217207170119
uc.419e289chr17:56557353-5655764110503AK126318SFRS1Dlc27779528928928928952195420000.2795289259289195
uc.420e233chr17:63046872-630471043628POLG2DDX5LOC9079958762332332332331121211120000.0883233204233183
uc.421n345chr18:20945142-20945486633234HRH4EHZFSS189030780000003450000.3216345338147101
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.422p226chr18:21000175-21000400688267HRH4EHZFSS18848164000122002260000.3724226224163135
uc.423n223chr18:21008342-21008564696434HRH4EHZFSS188400000000002230000.3804223223159143
uc.424p215chr18:21019766-21019980707858HRH4EHZFSS18828584000134002150000.128421521300
uc.425n325chr18:21117194-21117518805286HRH4EHZFSS187310460000003250000.0162325325241197
uc.426p262chr18:22167579-22167840142271MGC26605TAF4BKCTD1119023000262002620000.0166262261137103
uc.427p215chr18:22489186-2248940016890KCTD1\NAQP4198009090090000002150.948815398181112
uc.428p239chr18:28605196-28605434234AB037805\NLOC3748641639220127170210000239000.335232230220184
uc.429n238chr18:32732528-3273276571600C18orf10AB037749BRUNOL43437600000002380000.138323823600
uc.430n213chr18:33315637-33315849253801AB037749BRUNOL4PIK3C344713470000002130000.02521319911782
uc.431n230chr18:33430587-3343081632842BRUNOL4\NPIK3C343563800000000002300.008323021800
uc.432n211chr18:33816919-33817129419174BRUNOL4\NPIK3C339700670000000002110.847121120700
uc.433n206chr18:34315619-34315824917874BRUNOL4\NPIK3C334713720000000002060.000920619600
uc.434n249chr18:43022775-4302302368065HSPC039HSPC039AY1347455886950000002490000.153424924700
uc.435n227chr18:51238918-51239144463293SE57-1TCF4AK1277873538000000002270000.0103227226208190
uc.436e210chr18:51403228-51403437627603SE57-1TCF4AK12778718950792929913420721180000.227500121100
uc.437n215chr18:70484635-7048484983795CN1ZNF407AK0962314576700000002150000.1319215214215171
uc.438n241chr18:70484851-7048509184011CN1ZNF407AK0962314574280000002410000.343524124022
uc.439n263chr18:70490008-7049027089168CN1ZNF407AK0962314522490000002630000.23332632615244
uc.440n329chr18:70490342-7049067089502CN1ZNF407AK0962314518490000003290000.0323329327329244
uc.441p248chr18:70695569-70695816294729CN1ZNF407AK09623124670300071002480000.1752248246185149
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.442n249chr18:70719689-70719937318849CN1ZNF407AK0962312225820000002490000.3669249248249219
uc.443e239chr19:8433269-843350723371LOC51257HNRPMPRAM-1274335456611800531860000.3817239223204149
uc.444n388chr19:35186619-35187006103969AF336876C19orf2AF116658244840000003880000.4415388388388327
uc.445n310chr19:35258275-3525858445611AF116658\NAB0023882965830000000003100.000831031000
uc.446p272chr19:35439694-35439965227030AF116658\NAB002388115202000227000002720.745627226300
uc.447n273chr19:35459621-35459893246957AF116658\NAB002388952740000000002730.0766273271214167
uc.448n232chr19:35533370-35533601320706AF116658\NAB002388215660000000002320.0973232232232201
uc.449n290chr19:35695381-35695670482717AF116658AB002388AL1375186365300000002900000.3549290287289225
uc.450n211chr19:36279466-36279676538660AB002388\NAL137518525240000000002110.266121120900
uc.451n225chr19:36498460-36498684161862AL137518ZNF537BX64088110297080000002250000.3186223222198179
uc.452e204chr19:36519787-36519990183189AL137518ZNF537BX64088110084022040204204002040000.459204196204159
uc.453n325chr19:47129157-4712948125713ARHGEF1\NRABAC1231970000000003250.26910000
uc.454e208chr20:4861440-486164762148RASSF2SLC23A1C20orf3021383789175901760891190000.02571229210789
uc.455e245chr20:35043808-3504405239477C20orf52RNPC2C20orf5312079732452452457302450000.5704220212244175
uc.456e320chr20:42773185-42773504269198PTPRTSFRS6L3MBTL55085268283283320003200000.352319314254201
uc.457e211chr22:17770463-17770673116711CLTCL1HIRAMRPL402391611111121021101111000000.1111210157137106
uc.458e204chr22:34420305-3442050822961APOL5RBM9AK1308871912770360204002040000.62882041754131
uc.459e255chrX:20895986-208962401249809RPS6KA3CNK2FLJ34960138794147014712601471080000.0154255245202128
uc.460p275chrX:24184937-24185211132719PCYT1BPOLAARX199004000274002750000.043727527300
uc.461n397chrX:24226223-24226619174005PCYT1BPOLAARX1575960000003970000.008239739100
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.462p779chrX:24256252-24257030204034PCYT1BPOLAARX127185007780007790000.4128779759473259
uc.463n275chrX:24277308-24277582225090PCYT1BPOLAARX1066330000002750000.06772752723324
uc.464n770chrX:24277584-24278353225366PCYT1BPOLAARX1058620000007700000.1659770766647524
uc.465n310chrX:24278907-24279216226689PCYT1BPOLAARX1049990000003100000.085531030212283
uc.466n349chrX:24307884-24308232255666PCYT1BPOLAARX759830000003490000.173334934512290
uc.467n731chrX:24369780-24370510317562PCYT1BPOLAARX137050000007310000.0512731723315223
uc.468p489chrX:24378989-243794772462POLA\NARX4738000260000048900.0027400373371259
uc.469p222chrX:24379479-243797002952POLA\NARX451500039000022200.096620212100
uc.470n341chrX:24762642-24762982367361ARX\NMGC338897549060000000003410.01234131900
uc.471e239chrX:40239309-4023954712379AK127902DDX3XNYX980772390239239239000000.0955239230239156
uc.472e202chrX:40410244-4041044544342NYXCASKS79449155985202202202202202000000.049620219100
uc.473e222chrX:69240015-6924023611076TNRC11NLGN3GJB169630814781900601620000.5498145117200129
uc.474e210chrX:69335634-6933584323798GJB1ZNF261NONO345001511511742100151590000.317919913700
uc.475e397chrX:69632846-6963324213830TAF1OGTACRC318093977039739739703970000.0009397378394267
uc.476n238chrX:80545473-805457101235556SH3BGRL\NAK1274719871760000000002380.028223823100
uc.477e209chrX:101813348-10181355672535MGC39655PLP1MGC3990017550516520916520901652090000.882209165191113
uc.478e252chrX:121297212-1212974632415524GLUD2GRIA3THOC2145063115011925201152520000.4191252239243222
uc.479e302chrX:121311506-1213118072429818GLUD2GRIA3THOC2130719115011630201153020000.0034302277302255
uc.480e202chrX:121933027-121933228193364BIRC4STAG2SH2D1A2447202020202202202000000.35512312212369
uc.481e204chrX:121933230-121933433193567BIRC4STAG2SH2D1A2445152040204204204000000.4925204197204120
ultra conserved elementupstream genewithindownstream geneHumanAny SpeciesKnown Gene OverlapRNAfoldchickenFugu
nametypelengthBuild 34 (hg16) coordsdistancenamegenenamedistancemRNAspliced ESTmRNAESTUTRCDSintron10k upstr10k downintergenicp-valueoverlapidenticaloverlapidentical
uc.482n295chrX:137876095-137876389291047ATP11C\NSOX34157880000000002950.1879228195285208

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