Gene
and protein
sequences and sequencing centre annotations
P.
falciparum 3D7
Nuclear chromosomes:
Wellcome
Trust Sanger
Institute ftp
site
Version
11/08/2009
Mitochondrial and plastid chromosomes:
PlasmoDB downloads
Version
5.3 June 2007
Original
genome sequence
publication: Gardner et al. Genome sequence of
the human malaria parasite Plasmodium
falciparum.
(2002) Nature,
419: 498-511.
RNA-coding genes
P.
falciparum 3D7
University
of California, Santa Cruz Malaria
genome browser
Downloaded September 2007
Gene Ontology
annotations
P.
falciparum 3D7
Wellcome
Trust Sanger
Institute ftp
site
Version 03/04/2008
InterPro
predicted sequence features (domains etc)
P.
falciparum 3D7
Wellcome
Trust Sanger
Institute ftp
site
Version 14/08/2009
Ortholog/paralog
groups
P.
falciparum 3D7, P. vivax, P. knowlesi, P.
berghei, P. c. chabaudi, P.
y. yoelii
Wellcome
Trust Sanger
Institute ftp
site
Data
generated by OrthoMCL
Version 18/05/2009
Protein-protein
interactions
P.
falciparum
3D7
LaCount et
al. A protein interaction network of the
malaria
parasite Plasmodium
falciparum.
(2005) Nature,
438(7064):103-7.
Protein
experimentally-solved 3D structures
P. falciparum 3D7
RCSB
Protein
Data Bank
Last
download: November
2007
Protein
comparatively-modelled 3D structures
P.
falciparum 3D7
ModBase
Last
download: November
2007
MRNA
expression
data
P.
falciparum 3D7, Dd2 and HB3
Llinas
et
al. Comparative whole genome transcriptome
analysis of three Plasmodium
falciparum
strains. (2006) Nucleic
Acids Research,
34(4): 1166-73. [website]
HB3
data originally from
Bozdech et al. The Transcriptome of
the
Intraerythrocytic Developmental Cycle of Plasmodium
falciparum.
(2003) PLoS
Biology,
1(1): e5.
P.
falciparum 3D7 and
NF54
Young
et al. The Plasmodium
falciparum sexual development transcriptome: A microarray
analysis using ontology-based pattern identification. (2005) Molecular and Biochemical
Parasitology, 143(1): 67-79. [website]
P. falciparum 3D7
Le
Roch et al. Discovery
of Gene Function by Expression
Profiling of the Malaria Parasite Life Cycle. (2003) Science,
301(5639):
1503-8.
[website]
MRNA
decay data
P.
falciparum 3D7
Shock et al.
Whole-genome analysis of mRNA decay in Plasmodium
falciparum
reveals a global lengthening of mRNA half-life during
intra-erythrocytic development cycle. (2007) Genome
Biology,
8(7): R134.
Protein
expression data
P.
falciparum 3D7
Dataset
was downloaded
as a supplementary table from Le Roch et al.
Global analysis of transcript and protein levels across the Plasmodium
falciparum
life cycle. (2004) Genome
Research,
14: 2308-18.
Original
data from
Florens et al.
A
proteomic
view of the Plasmodium
falciparum
life cycle. (2002) Nature,
419: 520-26.
P.
falciparum NF54
Lasonder
et al.
Analysis
of the Plasmodium
falciparum
proteome by
high-accuracy mass spectrometry. (2002) Nature,
419: 537-42.
