Evan Paull - UCSC Bioinformatics and Systems Biology

Talks

2012 ISMB Awarded a 8 minute talk to go with poster presentation: HotLink: Identifying causal paths linking genomic perturbations to expression states in cancer.

Rotation Talks:

Distributed Database Implemenation and Performance Evaluation for Cactus Graph Alignments (Haussler Lab Rotation, Spring 2011)

Dynamic Respiration in Pyrobaculum aerophilum: discovery and categorization of small RNAs involved in switching terminal electron acceptors. (Lowe Lab Rotation, Winter 2011)

Drug Target Discovery using Chemical Genomic Studies in Yeast (Stuart Lab Rotation, Fall 2010)

Awards

2011 UCSC Graduate Research Symposium: Alumni Association Award Winner

2012 UCSC Graduate Research Symposium: Deans Award Winner

2012 NSF Graduate Research Fellowship (Honorable Mention)

Posters

2012 ISMB Poster Presentation (and 8 minute Talk): HotLink: Identifying causal paths linking genomic perturbations to expression states in cancer

2011 LINCS Fall Consortia Meeting, Rockville MD. Poster Presentation: Identifying causal paths linking genomic perturbations and differential phosphorylation to expression states in cancer

2011 Thermophiles Conference, Big Sky Montana. Poster Presentation: Investigation of small RNA expression dynamics in Pyrobaculum aerophilum during growth on different electron acceptors (Evan Paull, Aaron Cozen and Todd Lowe)

Classes and Research Rotations:

Past Projects:

Identifying causal paths linking genomic perturbations to expression states in cancer, with Dr. Stuart

Unnamed Meta-Clustering/Online learning project with Dan Carlin and Dr. Stuart

Pyrobaculum small RNA sequencing and regulatory discovery project with Aaron Cozen and Dr. Lowe.

The UCSC Biomolecular Entities and Sets Tool application; developed under the direction of Josh Stuart, with Dan Carlin and Sam Boyarsky:

Chemical Genomics - Drug Target Prediction

Pathway overlaps for various Yeast ORFs and the Boone map