*) Graduate School

    "The infinite sites model of genome evolution"
       Ma J, et al. PNAS 105: 14254-14261 (2008)
    "DUPCAR: Reconstructing contiguous ancestral regions with duplications"
       Ma J, et al. J Comp Biol 15: 1007-1027 (2008)
    "Reconstructing contiguous regions of an ancestral genome"
        Ma J, et al. Genome Res 16: 1557-15565 (2006)

*) Pre-Graduate School

    "Genome sequence of Theileria parva, a bovine pathogen that transforms
      lymphocytes"
        Gardner MJ, et al. Science 309: 134-137 (2005)
    "The Genome of the Basidiomycetous Yeast and Human Pathogen 
     Cryptococcus Neoformans"
        Loftus BJ, et al. Science 307: 1321-1324 (2005)
    "The genome of the protist parasite Entamoeba histolytica"
        Loftus B, et al. Nature 433: 865-868 (2005)
    "The sequence and analysis of Trypanosoma brucei chromosome II."
        El-Sayed NM, et al. Nucleic Acids Res 16: 4856-63 (2003)
    "Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax."
        Feng X, et al. Proc Natl Acad Sci USA 14: 8502-7 (2003)
    "In-depth view of structure, activity, and evolution of rice chromosome 10."
        Rice Chromosome 10 Sequencing Consortium. Science 300: 1566-1569 (2003)
    "The TIGR rice genome annotation resource: annotating the rice genome and
     creating resources for plant biologists."
        Yuan Q, et al. Nucleic Acids Res 31: 229-233 (2003)
    "Genome sequence of the human malaria parasite Plasmodium falciparum."
        Gardner MJ, et al. Nature 419: 498-511 (2002)
    "Genome sequence and comparative analysis of the model rodent malaria
     parasite Plasmodium yoelii yoelii."
        Carlton JC, et al. Nature 419: 512-519 (2002)
    "Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14."
        Gardner MJ, et al. Nature 419: 531-534 (2002)