|
Andrew Uzilov
Member of the Lowe Lab
Graduate Student (Sept 2007 - Mar 2013)
Bioinformatics PhD Program
University of California, Santa Cruz
|
I graduated from the University of Rochester (B.S. in Biochemistry, B.A. in Computer Science, both 2005), where I worked for Dave Mathews as an undergraduate.
Then I spent two years bumming around Ian Holmes' lab at UC Berkeley.
I earned my PhD advised by Todd Lowe in the Lowe lab in March 2013.
My latest whereabouts are likely to be found on
my LinkedIn page.
-
High-throughput sequencing of transcriptomes (RNA-Seq).
-
RNA structure (computational prediction and experimental determination).
-
Non-coding/functional RNA discovery and genomic annotation.
-
RNA engineering.
-
Underwood JG*, Uzilov AV*, Katzman S, Onodera CS, Mainzer JE, Mathews DH, Lowe TM, Salama SR, Haussler D.
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.
Nature Methods 7, 995–1001 (2010).
-
Bradley RK, Uzilov AV, Skinner ME, Bendaña YR, Barquist L, Holmes I.
Evolutionary modeling and prediction of non-coding RNAs in Drosophila.
PLoS One (2009) 4(8):e6478.
-
Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH.
JBrowse: a next-generation genome browser.
Genome Research (2009) 19:1630-1638.
-
Klosterman PS, Uzilov AV, Bendana YR, Bradley RK, Chao S, Kosiol C, Goldman N, Holmes I.
XRate: a fast prototyping, training and annotation tool for phylo-grammars.
BMC Bioinformatics (2006) 7:428.
-
Uzilov AV, Keegan JM, Mathews DH.
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.
BMC Bioinformatics (2006) 7:173.
Affiliations
I...
I was also a National Science Foundation Graduate Research Fellowship Program (NSF GRFP) fellow during 2009 - 2012.
Here is the BSOE news article.